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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FAOY] marine metagenome; seawater
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565256
FAOY01031313
[FAOY] marine metagenome; seawater
1
73
+
Thr
AGT
[ENA]
¢þ
>WENV170565281
FAOY01132819
[FAOY] marine metagenome; seawater
1
89
+
Ser
GCT
[ENA]
¢þ
>WENV170565269
FAOY01060020
[FAOY] marine metagenome; seawater
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV170565271
FAOY01065184
[FAOY] marine metagenome; seawater
3
74
+
Phe
GAA
[ENA]
¢þ
>WENV170565232
FAOY01008231
[FAOY] marine metagenome; seawater
3
89
+
Met
CAT
[ENA]
¢þ
>WENV170565277
FAOY01101230
[FAOY] marine metagenome; seawater
28
103
+
Gln
TTG
[ENA]
¢þ
>WENV170565237
FAOY01012995
[FAOY] marine metagenome; seawater
30
105
+
Ala
GGC
[ENA]
¢þ
>WENV170565276
FAOY01091100
[FAOY] marine metagenome; seawater
35
107
+
Gly
GCC
[ENA]
¢þ
>WENV170565278
FAOY01104821
[FAOY] marine metagenome; seawater
35
107
+
Arg
ACG
[ENA]
¢þ
>WENV170565220
FAOY01002821
[FAOY] marine metagenome; seawater
54
125
+
Cys
GCA
[ENA]
¢þ
>WENV170565249
FAOY01022819
[FAOY] marine metagenome; seawater
60
133
+
Cys
ACA
[ENA]
¢þ
>WENV170565258
FAOY01033103
[FAOY] marine metagenome; seawater
62
146
+
Leu
GAG
[ENA]
¢þ
>WENV170565283
FAOY01157913
[FAOY] marine metagenome; seawater
73
1
-
Cys
GCA
[ENA]
¢þ
>WENV170565272
FAOY01065184
[FAOY] marine metagenome; seawater
76
149
+
Glu
TTC
[ENA]
¢þ
>WENV170565242
FAOY01017966
[FAOY] marine metagenome; seawater
76
150
+
Lys
TTT
[ENA]
¢þ
>WENV170565282
FAOY01150465
[FAOY] marine metagenome; seawater
77
1
-
Ala
TGC
[ENA]
¢þ
>WENV170565268
FAOY01058265
[FAOY] marine metagenome; seawater
80
168
+
Ser
GCT
[ENA]
¢þ
>WENV170565262
FAOY01046834
[FAOY] marine metagenome; seawater
95
20
-
Thr
GGT
[ENA]
¢þ
>WENV170565280
FAOY01115263
[FAOY] marine metagenome; seawater
99
24
-
Asn
GTT
[ENA]
¢þ
>WENV170565214
FAOY01000979
[FAOY] marine metagenome; seawater
102
190
+
Ser
GCT
[ENA]
¢þ
>WENV170565266
FAOY01057362
[FAOY] marine metagenome; seawater
103
178
+
Thr
CGT
[ENA]
¢þ
>WENV170565274
FAOY01067488
[FAOY] marine metagenome; seawater
104
31
-
Arg
ACG
[ENA]
¢þ
>WENV170565247
FAOY01021630
[FAOY] marine metagenome; seawater
107
35
-
Ala
TGC
[ENA]
¢þ
>WENV170565229
FAOY01006097
[FAOY] marine metagenome; seawater
108
35
-
Arg
TCG
[ENA]
¢þ
>WENV170565236
FAOY01012555
[FAOY] marine metagenome; seawater
108
178
+
Gly
TCC
[ENA]
¢þ
>WENV170565233
FAOY01011303
[FAOY] marine metagenome; seawater
119
48
-
Gly
GCC
[ENA]
¢þ
>WENV170565263
FAOY01050413
[FAOY] marine metagenome; seawater
130
56
-
Thr
GGT
[ENA]
¢þ
>WENV170565221
FAOY01002821
[FAOY] marine metagenome; seawater
131
205
+
His
GTG
[ENA]
¢þ
>WENV170565223
FAOY01003132
[FAOY] marine metagenome; seawater
132
214
+
Tyr
GTA
[ENA]
¢þ
>WENV170565279
FAOY01106206
[FAOY] marine metagenome; seawater
133
49
-
Leu
CAA
[ENA]
¢þ
>WENV170565264
FAOY01053818
[FAOY] marine metagenome; seawater
136
65
-
Gln
TTG
[ENA]
¢þ
>WENV170565239
FAOY01014399
[FAOY] marine metagenome; seawater
138
52
-
Leu
TAA
[ENA]
¢þ
>WENV170565241
FAOY01017822
[FAOY] marine metagenome; seawater
138
63
-
Arg
TCT
[ENA]
¢þ
>WENV170565270
FAOY01060061
[FAOY] marine metagenome; seawater
141
225
+
Ser
TGA
[ENA]
¢þ
>WENV170565260
FAOY01038967
[FAOY] marine metagenome; seawater
144
227
+
Leu
TAA
[ENA]
¢þ
>WENV170565265
FAOY01056003
[FAOY] marine metagenome; seawater
148
73
-
Asp
GTC
[ENA]
¢þ
>WENV170565275
FAOY01073460
[FAOY] marine metagenome; seawater
150
77
-
Asn
GTT
[ENA]
¢þ
>WENV170565273
FAOY01065184
[FAOY] marine metagenome; seawater
151
223
+
Gln
TTG
[ENA]
¢þ
>WENV170565213
FAOY01000917
[FAOY] marine metagenome; seawater
159
243
+
Met
CAT
[ENA]
¢þ
>WENV170565243
FAOY01017966
[FAOY] marine metagenome; seawater
162
234
+
Asn
GTT
[ENA]
¢þ
>WENV170565259
FAOY01033517
[FAOY] marine metagenome; seawater
170
243
+
Glu
CTC
[ENA]
¢þ
>WENV170565261
FAOY01040529
[FAOY] marine metagenome; seawater
185
111
-
Glu
TTC
[ENA]
¢þ
>WENV170565252
FAOY01027033
[FAOY] marine metagenome; seawater
193
265
+
Gln
CTG
[ENA]
¢þ
>WENV170565228
FAOY01006097
[FAOY] marine metagenome; seawater
194
121
-
Thr
TGT
[ENA]
¢þ
>WENV170565246
FAOY01021630
[FAOY] marine metagenome; seawater
195
108
-
Ser
GCT
[ENA]
¢þ
>WENV170565235
FAOY01011415
[FAOY] marine metagenome; seawater
198
273
+
Thr
TGT
[ENA]
¢þ
>WENV170565231
FAOY01007507
[FAOY] marine metagenome; seawater
202
129
-
Arg
TCT
[ENA]
¢þ
>WENV170565245
FAOY01019518
[FAOY] marine metagenome; seawater
210
281
+
Asp
GTC
[ENA]
¢þ
>WENV170565267
FAOY01057402
[FAOY] marine metagenome; seawater
217
146
-
Ala
TGC
[ENA]
¢þ
>WENV170565251
FAOY01024737
[FAOY] marine metagenome; seawater
239
165
-
His
GTG
[ENA]
¢þ
>WENV170565257
FAOY01032008
[FAOY] marine metagenome; seawater
245
162
-
Tyr
GTA
[ENA]
¢þ
>WENV170565222
FAOY01002997
[FAOY] marine metagenome; seawater
248
176
-
Trp
CCA
[ENA]
¢þ
>WENV170565253
FAOY01028562
[FAOY] marine metagenome; seawater
249
323
+
Gln
TTG
[ENA]
¢þ
>WENV170565255
FAOY01030360
[FAOY] marine metagenome; seawater
278
205
-
Gln
TTG
[ENA]
¢þ
>WENV170565250
FAOY01023431
[FAOY] marine metagenome; seawater
280
208
-
Glu
TTC
[ENA]
¢þ
>WENV170565248
FAOY01021882
[FAOY] marine metagenome; seawater
289
216
-
Val
CAC
[ENA]
¢þ
>WENV170565216
FAOY01002235
[FAOY] marine metagenome; seawater
324
253
-
Glu
TTC
[ENA]
¢þ
>WENV170565244
FAOY01019420
[FAOY] marine metagenome; seawater
329
400
+
Pro
TGG
[ENA]
¢þ
>WENV170565230
FAOY01007507
[FAOY] marine metagenome; seawater
332
260
-
Thr
TGT
[ENA]
¢þ
>WENV170565254
FAOY01029678
[FAOY] marine metagenome; seawater
348
276
-
Gly
TCC
[ENA]
¢þ
>WENV170565226
FAOY01004171
[FAOY] marine metagenome; seawater
358
287
-
Gly
CCC
[ENA]
¢þ
>WENV170565211
FAOY01000438
[FAOY] marine metagenome; seawater
359
432
+
Asp
GTC
[ENA]
¢þ
>WENV170565234
FAOY01011347
[FAOY] marine metagenome; seawater
378
453
+
Gln
TTG
[ENA]
¢þ
>WENV170565240
FAOY01016144
[FAOY] marine metagenome; seawater
380
295
-
Leu
CAA
[ENA]
¢þ
>WENV170565238
FAOY01014339
[FAOY] marine metagenome; seawater
380
296
-
Leu
AAG
[ENA]
¢þ
>WENV170565218
FAOY01002454
[FAOY] marine metagenome; seawater
447
518
+
Val
TAC
[ENA]
¢þ
>WENV170565225
FAOY01003922
[FAOY] marine metagenome; seawater
478
551
+
Gly
TCC
[ENA]
¢þ
>WENV170565224
FAOY01003354
[FAOY] marine metagenome; seawater
541
468
-
Phe
GAA
[ENA]
¢þ
>WENV170565227
FAOY01006097
[FAOY] marine metagenome; seawater
573
498
-
Ala
TGC
[ENA]
¢þ
>WENV170565219
FAOY01002454
[FAOY] marine metagenome; seawater
626
702
+
Arg
GCG
[ENA]
¢þ
>WENV170565217
FAOY01002254
[FAOY] marine metagenome; seawater
708
637
-
Asp
GTC
[ENA]
¢þ
>WENV170565215
FAOY01001818
[FAOY] marine metagenome; seawater
757
684
-
Pro
TGG
[ENA]
¢þ
>WENV170565212
FAOY01000564
[FAOY] marine metagenome; seawater
799
726
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK