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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FAXA] hydrothermal vent metagenome; ocean water
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565287
FAXA01000024
[FAXA] hydrothermal vent metagenome; ocean water
336
249
-
Leu
TAA
[ENA]
¢þ
>WENV170565309
FAXA01000387
[FAXA] hydrothermal vent metagenome; ocean water
396
320
-
Val
CAC
[ENA]
¢þ
>WENV170565295
FAXA01000182
[FAXA] hydrothermal vent metagenome; ocean water
397
308
-
Ser
TGA
[ENA]
¢þ
>WENV170565314
FAXA01000395
[FAXA] hydrothermal vent metagenome; ocean water
515
588
+
Gly
TCC
[ENA]
¢þ
>WENV170565308
FAXA01000387
[FAXA] hydrothermal vent metagenome; ocean water
517
443
-
Met
CAT
[ENA]
¢þ
>WENV170565286
FAXA01000024
[FAXA] hydrothermal vent metagenome; ocean water
585
510
-
Cys
GCA
[ENA]
¢þ
>WENV170565285
FAXA01000024
[FAXA] hydrothermal vent metagenome; ocean water
724
638
-
Leu
GAG
[ENA]
¢þ
>WENV170565284
FAXA01000010
[FAXA] hydrothermal vent metagenome; ocean water
1557
1468
-
Ser
GCT
[ENA]
¢þ
>WENV170565292
FAXA01000150
[FAXA] hydrothermal vent metagenome; ocean water
1939
1863
-
Pro
GGG
[ENA]
¢þ
>WENV170565307
FAXA01000368
[FAXA] hydrothermal vent metagenome; ocean water
2056
1981
-
Arg
TCT
[ENA]
¢þ
>WENV170565317
FAXA01000444
[FAXA] hydrothermal vent metagenome; ocean water
2941
3030
+
Ser
CGA
[ENA]
¢þ
>WENV170565298
FAXA01000226
[FAXA] hydrothermal vent metagenome; ocean water
3318
3242
-
Arg
GCG
[ENA]
¢þ
>WENV170565297
FAXA01000226
[FAXA] hydrothermal vent metagenome; ocean water
3415
3330
-
Leu
CAG
[ENA]
¢þ
>WENV170565299
FAXA01000229
[FAXA] hydrothermal vent metagenome; ocean water
3482
3407
-
Ala
GGC
[ENA]
¢þ
>WENV170565296
FAXA01000226
[FAXA] hydrothermal vent metagenome; ocean water
3539
3464
-
Val
CAC
[ENA]
¢þ
>WENV170565294
FAXA01000176
[FAXA] hydrothermal vent metagenome; ocean water
3977
4052
+
Lys
TTT
[ENA]
¢þ
>WENV170565291
FAXA01000150
[FAXA] hydrothermal vent metagenome; ocean water
4594
4667
+
Gln
CTG
[ENA]
¢þ
>WENV170565288
FAXA01000098
[FAXA] hydrothermal vent metagenome; ocean water
4715
4789
+
Arg
CCG
[ENA]
¢þ
>WENV170565313
FAXA01000390
[FAXA] hydrothermal vent metagenome; ocean water
5239
5165
-
Met
CAT
[ENA]
¢þ
>WENV170565306
FAXA01000359
[FAXA] hydrothermal vent metagenome; ocean water
5580
5655
+
Phe
GAA
[ENA]
¢þ
>WENV170565290
FAXA01000109
[FAXA] hydrothermal vent metagenome; ocean water
6454
6543
+
Ser
GGA
[ENA]
¢þ
>WENV170565315
FAXA01000429
[FAXA] hydrothermal vent metagenome; ocean water
6600
6675
+
Asp
GTC
[ENA]
¢þ
>WENV170565316
FAXA01000443
[FAXA] hydrothermal vent metagenome; ocean water
8319
8393
+
Gly
CCC
[ENA]
¢þ
>WENV170565305
FAXA01000287
[FAXA] hydrothermal vent metagenome; ocean water
8991
8915
-
Ile
GAT
[ENA]
¢þ
>WENV170565318
FAXA01000464
[FAXA] hydrothermal vent metagenome; ocean water
9775
9701
-
Pro
CGG
[ENA]
¢þ
>WENV170565289
FAXA01000098
[FAXA] hydrothermal vent metagenome; ocean water
12183
12257
+
Pro
TGG
[ENA]
¢þ
>WENV170565304
FAXA01000249
[FAXA] hydrothermal vent metagenome; ocean water
13682
13609
-
Gln
TTG
[ENA]
¢þ
>WENV170565300
FAXA01000246
[FAXA] hydrothermal vent metagenome; ocean water
14801
14888
+
Tyr
GTA
[ENA]
¢þ
>WENV170565301
FAXA01000246
[FAXA] hydrothermal vent metagenome; ocean water
14987
15061
+
Thr
GGT
[ENA]
¢þ
>WENV170565310
FAXA01000390
[FAXA] hydrothermal vent metagenome; ocean water
20427
20502
+
Ala
CGC
[ENA]
¢þ
>WENV170565311
FAXA01000390
[FAXA] hydrothermal vent metagenome; ocean water
20507
20582
+
Arg
CCT
[ENA]
¢þ
>WENV170565312
FAXA01000390
[FAXA] hydrothermal vent metagenome; ocean water
20663
20740
+
Trp
CCA
[ENA]
¢þ
>WENV170565293
FAXA01000151
[FAXA] hydrothermal vent metagenome; ocean water
23446
23520
+
Met
CAT
[ENA]
¢þ
>WENV170565302
FAXA01000248
[FAXA] hydrothermal vent metagenome; ocean water
67708
67782
+
Thr
CGT
[ENA]
¢þ
>WENV170565303
FAXA01000248
[FAXA] hydrothermal vent metagenome; ocean water
67821
67895
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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