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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FAXC] hydrothermal vent metagenome; ocean water
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565323
FAXC01000073
[FAXC] hydrothermal vent metagenome; ocean water
52
125
+
Lys
TTT
[ENA]
¢þ
>WENV170565364
FAXC01000445
[FAXC] hydrothermal vent metagenome; ocean water
54
129
+
Lys
CTT
[ENA]
¢þ
>WENV170565349
FAXC01000353
[FAXC] hydrothermal vent metagenome; ocean water
425
332
-
Ser
GCT
[ENA]
¢þ
>WENV170565341
FAXC01000248
[FAXC] hydrothermal vent metagenome; ocean water
715
791
+
Arg
CCG
[ENA]
¢þ
>WENV170565354
FAXC01000388
[FAXC] hydrothermal vent metagenome; ocean water
902
975
+
Lys
TTT
[ENA]
¢þ
>WENV170565357
FAXC01000402
[FAXC] hydrothermal vent metagenome; ocean water
1084
1155
+
Gln
CTG
[ENA]
¢þ
>WENV170565334
FAXC01000161
[FAXC] hydrothermal vent metagenome; ocean water
1117
1188
+
Gln
CTG
[ENA]
¢þ
>WENV170565337
FAXC01000192
[FAXC] hydrothermal vent metagenome; ocean water
1152
1226
+
Cys
GCA
[ENA]
¢þ
>WENV170565358
FAXC01000402
[FAXC] hydrothermal vent metagenome; ocean water
1171
1245
+
Arg
ACG
[ENA]
¢þ
>WENV170565335
FAXC01000161
[FAXC] hydrothermal vent metagenome; ocean water
1204
1278
+
Arg
ACG
[ENA]
¢þ
>WENV170565338
FAXC01000192
[FAXC] hydrothermal vent metagenome; ocean water
1233
1320
+
Leu
TAA
[ENA]
¢þ
>WENV170565339
FAXC01000232
[FAXC] hydrothermal vent metagenome; ocean water
1244
1170
-
Glu
TTC
[ENA]
¢þ
>WENV170565359
FAXC01000402
[FAXC] hydrothermal vent metagenome; ocean water
1276
1348
+
Glu
CTC
[ENA]
¢þ
>WENV170565336
FAXC01000161
[FAXC] hydrothermal vent metagenome; ocean water
1309
1381
+
Glu
CTC
[ENA]
¢þ
>WENV170565331
FAXC01000145
[FAXC] hydrothermal vent metagenome; ocean water
1662
1736
+
Arg
CCG
[ENA]
¢þ
>WENV170565360
FAXC01000422
[FAXC] hydrothermal vent metagenome; ocean water
1737
1825
+
Ser
CGA
[ENA]
¢þ
>WENV170565344
FAXC01000281
[FAXC] hydrothermal vent metagenome; ocean water
2028
1954
-
Arg
TCT
[ENA]
¢þ
>WENV170565322
FAXC01000068
[FAXC] hydrothermal vent metagenome; ocean water
2073
1999
-
Asp
GTC
[ENA]
¢þ
>WENV170565352
FAXC01000370
[FAXC] hydrothermal vent metagenome; ocean water
2525
2449
-
Val
GAC
[ENA]
¢þ
>WENV170565329
FAXC01000096
[FAXC] hydrothermal vent metagenome; ocean water
2586
2510
-
Met
CAT
[ENA]
¢þ
>WENV170565347
FAXC01000328
[FAXC] hydrothermal vent metagenome; ocean water
2678
2751
+
Met
CAT
[ENA]
¢þ
>WENV170565355
FAXC01000390
[FAXC] hydrothermal vent metagenome; ocean water
2964
3037
+
Ala
GGC
[ENA]
¢þ
>WENV170565319
FAXC01000040
[FAXC] hydrothermal vent metagenome; ocean water
3845
3918
+
Gln
TTG
[ENA]
¢þ
>WENV170565324
FAXC01000081
[FAXC] hydrothermal vent metagenome; ocean water
3924
3850
-
Arg
TCT
[ENA]
¢þ
>WENV170565363
FAXC01000432
[FAXC] hydrothermal vent metagenome; ocean water
4007
3932
-
Ala
TGC
[ENA]
¢þ
>WENV170565362
FAXC01000432
[FAXC] hydrothermal vent metagenome; ocean water
4111
4037
-
Ile
GAT
[ENA]
¢þ
>WENV170565340
FAXC01000234
[FAXC] hydrothermal vent metagenome; ocean water
4142
4057
-
Leu
TAG
[ENA]
¢þ
>WENV170565366
FAXC01000449
[FAXC] hydrothermal vent metagenome; ocean water
4632
4546
-
Leu
CAA
[ENA]
¢þ
>WENV170565350
FAXC01000367
[FAXC] hydrothermal vent metagenome; ocean water
4940
5015
+
His
GTG
[ENA]
¢þ
>WENV170565351
FAXC01000367
[FAXC] hydrothermal vent metagenome; ocean water
5042
5117
+
Pro
TGG
[ENA]
¢þ
>WENV170565320
FAXC01000045
[FAXC] hydrothermal vent metagenome; ocean water
5160
5085
-
Asn
GTT
[ENA]
¢þ
>WENV170565367
FAXC01000497
[FAXC] hydrothermal vent metagenome; ocean water
5425
5352
-
Met
CAT
[ENA]
¢þ
>WENV170565332
FAXC01000146
[FAXC] hydrothermal vent metagenome; ocean water
6780
6704
-
Val
TAC
[ENA]
¢þ
>WENV170565342
FAXC01000262
[FAXC] hydrothermal vent metagenome; ocean water
7194
7120
-
Glu
TTC
[ENA]
¢þ
>WENV170565343
FAXC01000278
[FAXC] hydrothermal vent metagenome; ocean water
9190
9117
-
Gln
TTG
[ENA]
¢þ
>WENV170565361
FAXC01000422
[FAXC] hydrothermal vent metagenome; ocean water
9476
9551
+
Ala
CGC
[ENA]
¢þ
>WENV170565321
FAXC01000053
[FAXC] hydrothermal vent metagenome; ocean water
9558
9632
+
Arg
CCG
[ENA]
¢þ
>WENV170565348
FAXC01000328
[FAXC] hydrothermal vent metagenome; ocean water
10319
10392
+
Met
CAT
[ENA]
¢þ
>WENV170565330
FAXC01000108
[FAXC] hydrothermal vent metagenome; ocean water
11404
11478
+
Val
TAC
[ENA]
¢þ
>WENV170565328
FAXC01000096
[FAXC] hydrothermal vent metagenome; ocean water
11656
11582
-
Gly
CCC
[ENA]
¢þ
>WENV170565356
FAXC01000390
[FAXC] hydrothermal vent metagenome; ocean water
12865
12938
+
Gly
GCC
[ENA]
¢þ
>WENV170565353
FAXC01000371
[FAXC] hydrothermal vent metagenome; ocean water
13949
14022
+
Phe
GAA
[ENA]
¢þ
>WENV170565365
FAXC01000449
[FAXC] hydrothermal vent metagenome; ocean water
20541
20457
-
Leu
CAG
[ENA]
¢þ
>WENV170565346
FAXC01000284
[FAXC] hydrothermal vent metagenome; ocean water
21187
21114
-
Thr
CGT
[ENA]
¢þ
>WENV170565333
FAXC01000150
[FAXC] hydrothermal vent metagenome; ocean water
22775
22701
-
Glu
TTC
[ENA]
¢þ
>WENV170565325
FAXC01000082
[FAXC] hydrothermal vent metagenome; ocean water
25456
25531
+
His
GTG
[ENA]
¢þ
>WENV170565345
FAXC01000284
[FAXC] hydrothermal vent metagenome; ocean water
26419
26344
-
Lys
CTT
[ENA]
¢þ
>WENV170565326
FAXC01000082
[FAXC] hydrothermal vent metagenome; ocean water
46137
46212
+
His
GTG
[ENA]
¢þ
>WENV170565327
FAXC01000082
[FAXC] hydrothermal vent metagenome; ocean water
48970
49047
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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