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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FAXJ] soil metagenome; soil
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565368
FAXJ01000002
[FAXJ] soil metagenome; soil
49582
49655
+
Met
CAT
[ENA]
¢þ
>WENV170565369
FAXJ01000002
[FAXJ] soil metagenome; soil
49661
49734
+
Gly
GCC
[ENA]
¢þ
>WENV170565370
FAXJ01000002
[FAXJ] soil metagenome; soil
49758
49831
+
Gly
TCC
[ENA]
¢þ
>WENV170565371
FAXJ01000002
[FAXJ] soil metagenome; soil
49849
49922
+
Gly
CCC
[ENA]
¢þ
>WENV170565372
FAXJ01000002
[FAXJ] soil metagenome; soil
49924
49997
+
Gly
TCC
[ENA]
¢þ
>WENV170565373
FAXJ01000002
[FAXJ] soil metagenome; soil
51826
51899
+
Thr
TGT
[ENA]
¢þ
>WENV170565374
FAXJ01000002
[FAXJ] soil metagenome; soil
51909
51982
+
Thr
CGT
[ENA]
¢þ
>WENV170565375
FAXJ01000002
[FAXJ] soil metagenome; soil
52485
52559
+
Cys
GCA
[ENA]
¢þ
>WENV170565376
FAXJ01000002
[FAXJ] soil metagenome; soil
54090
54163
+
Lys
TTT
[ENA]
¢þ
>WENV170565377
FAXJ01000002
[FAXJ] soil metagenome; soil
55594
55671
+
Pro
TGG
[ENA]
¢þ
>WENV170565378
FAXJ01000002
[FAXJ] soil metagenome; soil
56046
56122
+
Pro
GGG
[ENA]
¢þ
>WENV170565379
FAXJ01000002
[FAXJ] soil metagenome; soil
57326
57400
+
Arg
GCG
[ENA]
¢þ
>WENV170565380
FAXJ01000002
[FAXJ] soil metagenome; soil
59840
59927
+
Tyr
GTA
[ENA]
¢þ
>WENV170565381
FAXJ01000002
[FAXJ] soil metagenome; soil
60139
60214
+
Asn
GTT
[ENA]
¢þ
>WENV170565382
FAXJ01000002
[FAXJ] soil metagenome; soil
64265
64338
+
Arg
TCG
[ENA]
¢þ
>WENV170565383
FAXJ01000002
[FAXJ] soil metagenome; soil
67884
67961
+
Lys
CTT
[ENA]
¢þ
>WENV170565384
FAXJ01000002
[FAXJ] soil metagenome; soil
68929
69007
+
Pro
CGG
[ENA]
¢þ
>WENV170565385
FAXJ01000002
[FAXJ] soil metagenome; soil
69085
69169
+
Leu
CAG
[ENA]
¢þ
>WENV170565386
FAXJ01000002
[FAXJ] soil metagenome; soil
72572
72645
+
Val
TAC
[ENA]
¢þ
>WENV170565387
FAXJ01000002
[FAXJ] soil metagenome; soil
72843
72933
+
Ser
GCT
[ENA]
¢þ
>WENV170565388
FAXJ01000002
[FAXJ] soil metagenome; soil
73684
73757
+
Val
CAC
[ENA]
¢þ
>WENV170565389
FAXJ01000002
[FAXJ] soil metagenome; soil
76348
76426
+
Pro
TGG
[ENA]
¢þ
>WENV170565390
FAXJ01000002
[FAXJ] soil metagenome; soil
77714
77798
+
Leu
GAG
[ENA]
¢þ
>WENV170565391
FAXJ01000002
[FAXJ] soil metagenome; soil
79223
79296
+
Ala
CGC
[ENA]
¢þ
>WENV170565392
FAXJ01000002
[FAXJ] soil metagenome; soil
81846
81919
+
Ala
GGC
[ENA]
¢þ
>WENV170565393
FAXJ01000002
[FAXJ] soil metagenome; soil
82602
82675
+
Gln
CTG
[ENA]
¢þ
>WENV170565394
FAXJ01000002
[FAXJ] soil metagenome; soil
82879
82966
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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