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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FJVR] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565415
FJVR01000101
[FJVR] metagenome; soil
75
1
-
Gly
TCC
[ENA]
¢þ
>WENV170565408
FJVR01000063
[FJVR] metagenome; soil
361
437
+
Ala
GGC
[ENA]
¢þ
>WENV170565406
FJVR01000024
[FJVR] metagenome; soil
1968
1892
-
Met
CAT
[ENA]
¢þ
>WENV170565410
FJVR01000078
[FJVR] metagenome; soil
2171
2095
-
Lys
TTT
[ENA]
¢þ
>WENV170565411
FJVR01000084
[FJVR] metagenome; soil
3008
3085
+
His
GTG
[ENA]
¢þ
>WENV170565414
FJVR01000092
[FJVR] metagenome; soil
3563
3639
+
Arg
TCG
[ENA]
¢þ
>WENV170565409
FJVR01000066
[FJVR] metagenome; soil
3830
3904
+
Glu
TTC
[ENA]
¢þ
>WENV170565405
FJVR01000024
[FJVR] metagenome; soil
5501
5425
-
Met
CAT
[ENA]
¢þ
>WENV170565404
FJVR01000024
[FJVR] metagenome; soil
7736
7811
+
Met
CAT
[ENA]
¢þ
>WENV170565413
FJVR01000085
[FJVR] metagenome; soil
8361
8270
-
Ser
CGA
[ENA]
¢þ
>WENV170565412
FJVR01000085
[FJVR] metagenome; soil
9913
9837
-
Arg
GCG
[ENA]
¢þ
>WENV170565407
FJVR01000042
[FJVR] metagenome; soil
13529
13453
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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