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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FJVU] metagenome; soil
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565434
FJVU01000830
[FJVU] metagenome; soil
1
76
+
Met
CAT
[ENA]
¢þ
>WENV170565422
FJVU01000457
[FJVU] metagenome; soil
763
681
-
Leu
GAG
[ENA]
¢þ
>WENV170565433
FJVU01000769
[FJVU] metagenome; soil
875
949
+
His
GTG
[ENA]
¢þ
>WENV170565430
FJVU01000642
[FJVU] metagenome; soil
1103
1177
+
Arg
TCT
[ENA]
¢þ
>WENV170565432
FJVU01000684
[FJVU] metagenome; soil
1369
1281
-
Ser
GGA
[ENA]
¢þ
>WENV170565418
FJVU01000102
[FJVU] metagenome; soil
1809
1734
-
Ala
CGC
[ENA]
¢þ
>WENV170565435
FJVU01000866
[FJVU] metagenome; soil
1830
1747
-
Tyr
GTA
[ENA]
¢þ
>WENV170565420
FJVU01000393
[FJVU] metagenome; soil
2232
2317
+
Leu
TAA
[ENA]
¢þ
>WENV170565423
FJVU01000501
[FJVU] metagenome; soil
2261
2187
-
Arg
ACG
[ENA]
¢þ
>WENV170565427
FJVU01000593
[FJVU] metagenome; soil
2614
2539
-
Asp
GTC
[ENA]
¢þ
>WENV170565421
FJVU01000428
[FJVU] metagenome; soil
2748
2832
+
Leu
CAG
[ENA]
¢þ
>WENV170565428
FJVU01000629
[FJVU] metagenome; soil
3215
3132
-
Leu
CAA
[ENA]
¢þ
>WENV170565426
FJVU01000572
[FJVU] metagenome; soil
3650
3721
+
Gln
CTG
[ENA]
¢þ
>WENV170565425
FJVU01000560
[FJVU] metagenome; soil
3813
3740
-
Asn
GTT
[ENA]
¢þ
>WENV170565429
FJVU01000635
[FJVU] metagenome; soil
3956
3865
-
Ser
GCT
[ENA]
¢þ
>WENV170565431
FJVU01000666
[FJVU] metagenome; soil
4122
4193
+
Gly
CCC
[ENA]
¢þ
>WENV170565419
FJVU01000341
[FJVU] metagenome; soil
5793
5868
+
Phe
GAA
[ENA]
¢þ
>WENV170565424
FJVU01000509
[FJVU] metagenome; soil
9197
9126
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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