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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FJVV] metagenome; soil
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565489
FJVV01000872
[FJVV] metagenome; soil
4
93
+
Ser
CGA
[ENA]
¢þ
>WENV170565453
FJVV01000339
[FJVV] metagenome; soil
56
130
+
Arg
CCG
[ENA]
¢þ
>WENV170565445
FJVV01000249
[FJVV] metagenome; soil
78
151
+
Gln
TTG
[ENA]
¢þ
>WENV170565443
FJVV01000221
[FJVV] metagenome; soil
90
164
+
Met
CAT
[ENA]
¢þ
>WENV170565451
FJVV01000291
[FJVV] metagenome; soil
160
85
-
Thr
GGT
[ENA]
¢þ
>WENV170565441
FJVV01000128
[FJVV] metagenome; soil
178
252
+
Asn
GTT
[ENA]
¢þ
>WENV170565474
FJVV01000452
[FJVV] metagenome; soil
244
168
-
Asp
GTC
[ENA]
¢þ
>WENV170565459
FJVV01000365
[FJVV] metagenome; soil
244
170
-
Met
CAT
[ENA]
¢þ
>WENV170565491
FJVV01000899
[FJVV] metagenome; soil
328
403
+
Phe
GAA
[ENA]
¢þ
>WENV170565482
FJVV01000637
[FJVV] metagenome; soil
400
309
-
Ser
GCT
[ENA]
¢þ
>WENV170565452
FJVV01000296
[FJVV] metagenome; soil
594
670
+
Glu
TTC
[ENA]
¢þ
>WENV170565461
FJVV01000369
[FJVV] metagenome; soil
692
618
-
Asn
GTT
[ENA]
¢þ
>WENV170565440
FJVV01000108
[FJVV] metagenome; soil
728
801
+
Gln
TTG
[ENA]
¢þ
>WENV170565455
FJVV01000349
[FJVV] metagenome; soil
822
735
-
Ser
TGA
[ENA]
¢þ
>WENV170565473
FJVV01000452
[FJVV] metagenome; soil
979
1055
+
Arg
TCT
[ENA]
¢þ
>WENV170565490
FJVV01000888
[FJVV] metagenome; soil
1096
1020
-
Arg
ACG
[ENA]
¢þ
>WENV170565476
FJVV01000530
[FJVV] metagenome; soil
1356
1443
+
Ser
CGA
[ENA]
¢þ
>WENV170565480
FJVV01000556
[FJVV] metagenome; soil
1439
1523
+
Leu
CAG
[ENA]
¢þ
>WENV170565439
FJVV01000080
[FJVV] metagenome; soil
1999
1925
-
Lys
TTT
[ENA]
¢þ
>WENV170565472
FJVV01000451
[FJVV] metagenome; soil
2116
2191
+
Met
CAT
[ENA]
¢þ
>WENV170565487
FJVV01000757
[FJVV] metagenome; soil
2217
2293
+
Asp
GTC
[ENA]
¢þ
>WENV170565485
FJVV01000681
[FJVV] metagenome; soil
2367
2443
+
His
GTG
[ENA]
¢þ
>WENV170565458
FJVV01000359
[FJVV] metagenome; soil
2853
2929
+
Arg
TCT
[ENA]
¢þ
>WENV170565462
FJVV01000376
[FJVV] metagenome; soil
2918
3002
+
Leu
CAA
[ENA]
¢þ
>WENV170565448
FJVV01000279
[FJVV] metagenome; soil
2997
2921
-
Pro
TGG
[ENA]
¢þ
>WENV170565444
FJVV01000237
[FJVV] metagenome; soil
3138
3211
+
Gly
TCC
[ENA]
¢þ
>WENV170565437
FJVV01000054
[FJVV] metagenome; soil
3149
3076
-
Glu
CTC
[ENA]
¢þ
>WENV170565484
FJVV01000666
[FJVV] metagenome; soil
3268
3184
-
Leu
CAG
[ENA]
¢þ
>WENV170565492
FJVV01001011
[FJVV] metagenome; soil
3407
3482
+
Met
CAT
[ENA]
¢þ
>WENV170565463
FJVV01000376
[FJVV] metagenome; soil
3493
3569
+
Pro
GGG
[ENA]
¢þ
>WENV170565488
FJVV01000804
[FJVV] metagenome; soil
4146
4222
+
Glu
TTC
[ENA]
¢þ
>WENV170565471
FJVV01000412
[FJVV] metagenome; soil
4320
4403
+
Leu
TAG
[ENA]
¢þ
>WENV170565456
FJVV01000351
[FJVV] metagenome; soil
4634
4543
-
Ser
GCT
[ENA]
¢þ
>WENV170565481
FJVV01000605
[FJVV] metagenome; soil
4838
4914
+
Val
CAC
[ENA]
¢þ
>WENV170565475
FJVV01000508
[FJVV] metagenome; soil
4936
5011
+
Met
CAT
[ENA]
¢þ
>WENV170565442
FJVV01000186
[FJVV] metagenome; soil
5181
5255
+
Thr
CGT
[ENA]
¢þ
>WENV170565486
FJVV01000734
[FJVV] metagenome; soil
6934
7019
+
Tyr
GTA
[ENA]
¢þ
>WENV170565466
FJVV01000382
[FJVV] metagenome; soil
7394
7469
+
Thr
GGT
[ENA]
¢þ
>WENV170565479
FJVV01000544
[FJVV] metagenome; soil
9617
9544
-
Gln
CTG
[ENA]
¢þ
>WENV170565478
FJVV01000544
[FJVV] metagenome; soil
9765
9691
-
Thr
TGT
[ENA]
¢þ
>WENV170565477
FJVV01000544
[FJVV] metagenome; soil
9927
9853
-
Lys
CTT
[ENA]
¢þ
>WENV170565454
FJVV01000349
[FJVV] metagenome; soil
10936
11012
+
Val
GAC
[ENA]
¢þ
>WENV170565446
FJVV01000275
[FJVV] metagenome; soil
11323
11250
-
Gly
TCC
[ENA]
¢þ
>WENV170565469
FJVV01000411
[FJVV] metagenome; soil
11340
11415
+
Ala
GGC
[ENA]
¢þ
>WENV170565447
FJVV01000276
[FJVV] metagenome; soil
11416
11331
-
Tyr
GTA
[ENA]
¢þ
>WENV170565450
FJVV01000286
[FJVV] metagenome; soil
12816
12901
+
Leu
TAA
[ENA]
¢þ
>WENV170565468
FJVV01000409
[FJVV] metagenome; soil
12834
12759
-
Gly
GCC
[ENA]
¢þ
>WENV170565457
FJVV01000357
[FJVV] metagenome; soil
13192
13265
+
Cys
GCA
[ENA]
¢þ
>WENV170565460
FJVV01000369
[FJVV] metagenome; soil
13743
13667
-
Pro
CGG
[ENA]
¢þ
>WENV170565436
FJVV01000028
[FJVV] metagenome; soil
13958
13886
-
Thr
CGT
[ENA]
¢þ
>WENV170565438
FJVV01000060
[FJVV] metagenome; soil
14841
14757
-
Leu
GAG
[ENA]
¢þ
>WENV170565465
FJVV01000380
[FJVV] metagenome; soil
15733
15657
-
Asp
GTC
[ENA]
¢þ
>WENV170565449
FJVV01000281
[FJVV] metagenome; soil
27059
27134
+
Arg
CCT
[ENA]
¢þ
>WENV170565483
FJVV01000642
[FJVV] metagenome; soil
27720
27794
+
Arg
CCG
[ENA]
¢þ
>WENV170565464
FJVV01000379
[FJVV] metagenome; soil
28581
28507
-
Glu
CTC
[ENA]
¢þ
>WENV170565470
FJVV01000411
[FJVV] metagenome; soil
29673
29599
-
Met
CAT
[ENA]
¢þ
>WENV170565467
FJVV01000409
[FJVV] metagenome; soil
35866
35790
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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