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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FJVW] metagenome; soil
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565511
FJVW01000349
[FJVW] metagenome; soil
427
343
-
Leu
GAG
[ENA]
¢þ
>WENV170565495
FJVW01000100
[FJVW] metagenome; soil
642
567
-
Trp
CCA
[ENA]
¢þ
>WENV170565500
FJVW01000194
[FJVW] metagenome; soil
752
827
+
Thr
CGT
[ENA]
¢þ
>WENV170565504
FJVW01000315
[FJVW] metagenome; soil
994
1070
+
Pro
TGG
[ENA]
¢þ
>WENV170565518
FJVW01000612
[FJVW] metagenome; soil
1063
977
-
Leu
CAG
[ENA]
¢þ
>WENV170565505
FJVW01000315
[FJVW] metagenome; soil
1097
1173
+
Pro
CGG
[ENA]
¢þ
>WENV170565509
FJVW01000337
[FJVW] metagenome; soil
1302
1378
+
Lys
TTT
[ENA]
¢þ
>WENV170565514
FJVW01000504
[FJVW] metagenome; soil
1409
1484
+
Val
TAC
[ENA]
¢þ
>WENV170565496
FJVW01000120
[FJVW] metagenome; soil
1434
1350
-
Leu
GAG
[ENA]
¢þ
>WENV170565498
FJVW01000163
[FJVW] metagenome; soil
1520
1446
-
Thr
GGT
[ENA]
¢þ
>WENV170565503
FJVW01000246
[FJVW] metagenome; soil
1530
1605
+
Thr
TGT
[ENA]
¢þ
>WENV170565494
FJVW01000079
[FJVW] metagenome; soil
1553
1477
-
Pro
GGG
[ENA]
¢þ
>WENV170565507
FJVW01000317
[FJVW] metagenome; soil
1722
1795
+
Cys
GCA
[ENA]
¢þ
>WENV170565501
FJVW01000212
[FJVW] metagenome; soil
1807
1732
-
Gly
GCC
[ENA]
¢þ
>WENV170565506
FJVW01000315
[FJVW] metagenome; soil
1814
1890
+
Arg
TCT
[ENA]
¢þ
>WENV170565510
FJVW01000339
[FJVW] metagenome; soil
1997
2072
+
Ala
GGC
[ENA]
¢þ
>WENV170565502
FJVW01000240
[FJVW] metagenome; soil
2106
2181
+
Lys
CTT
[ENA]
¢þ
>WENV170565493
FJVW01000031
[FJVW] metagenome; soil
2279
2188
-
Ser
GCT
[ENA]
¢þ
>WENV170565517
FJVW01000575
[FJVW] metagenome; soil
2385
2460
+
His
GTG
[ENA]
¢þ
>WENV170565508
FJVW01000317
[FJVW] metagenome; soil
2401
2476
+
Asn
GTT
[ENA]
¢þ
>WENV170565512
FJVW01000417
[FJVW] metagenome; soil
2452
2376
-
Met
CAT
[ENA]
¢þ
>WENV170565519
FJVW01000664
[FJVW] metagenome; soil
2819
2893
+
Gly
GCC
[ENA]
¢þ
>WENV170565497
FJVW01000137
[FJVW] metagenome; soil
3593
3504
-
Ser
TGA
[ENA]
¢þ
>WENV170565499
FJVW01000176
[FJVW] metagenome; soil
4388
4314
-
Val
CAC
[ENA]
¢þ
>WENV170565515
FJVW01000504
[FJVW] metagenome; soil
6334
6258
-
Asp
GTC
[ENA]
¢þ
>WENV170565513
FJVW01000482
[FJVW] metagenome; soil
6392
6317
-
Met
CAT
[ENA]
¢þ
>WENV170565516
FJVW01000531
[FJVW] metagenome; soil
7295
7211
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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