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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FJVX] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565521
FJVX01000481
[FJVX] metagenome; soil
5
81
+
Pro
CGG
[ENA]
¢þ
>WENV170565520
FJVX01000195
[FJVX] metagenome; soil
5
81
+
Met
CAT
[ENA]
¢þ
>WENV170565524
FJVX01000870
[FJVX] metagenome; soil
132
56
-
Pro
GGG
[ENA]
¢þ
>WENV170565529
FJVX01001057
[FJVX] metagenome; soil
164
89
-
Glu
TTC
[ENA]
¢þ
>WENV170565528
FJVX01001057
[FJVX] metagenome; soil
350
275
-
Ala
GGC
[ENA]
¢þ
>WENV170565527
FJVX01001026
[FJVX] metagenome; soil
355
447
+
Leu
TAA
[ENA]
¢þ
>WENV170565526
FJVX01001005
[FJVX] metagenome; soil
753
829
+
Met
CAT
[ENA]
¢þ
>WENV170565530
FJVX01001341
[FJVX] metagenome; soil
840
754
-
Leu
CAA
[ENA]
¢þ
>WENV170565525
FJVX01000891
[FJVX] metagenome; soil
2180
2105
-
Thr
CGT
[ENA]
¢þ
>WENV170565523
FJVX01000800
[FJVX] metagenome; soil
3206
3131
-
Lys
TTT
[ENA]
¢þ
>WENV170565522
FJVX01000717
[FJVX] metagenome; soil
6277
6353
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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