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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FJVY] metagenome; soil
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565539
FJVY01000034
[FJVY] metagenome; soil
78
4
-
Gln
TTG
[ENA]
¢þ
>WENV170565565
FJVY01000785
[FJVY] metagenome; soil
84
10
-
Arg
TCT
[ENA]
¢þ
>WENV170565545
FJVY01000055
[FJVY] metagenome; soil
219
145
-
Glu
CTC
[ENA]
¢þ
>WENV170565560
FJVY01000493
[FJVY] metagenome; soil
512
586
+
Lys
TTT
[ENA]
¢þ
>WENV170565557
FJVY01000135
[FJVY] metagenome; soil
1122
1051
-
Arg
ACG
[ENA]
¢þ
>WENV170565555
FJVY01000082
[FJVY] metagenome; soil
1322
1398
+
Val
TAC
[ENA]
¢þ
>WENV170565532
FJVY01000019
[FJVY] metagenome; soil
1403
1492
+
Ser
TGA
[ENA]
¢þ
>WENV170565553
FJVY01000079
[FJVY] metagenome; soil
1482
1556
+
Gly
TCC
[ENA]
¢þ
>WENV170565554
FJVY01000079
[FJVY] metagenome; soil
1560
1636
+
Arg
TCT
[ENA]
¢þ
>WENV170565533
FJVY01000019
[FJVY] metagenome; soil
1614
1706
+
Ser
GCT
[ENA]
¢þ
>WENV170565550
FJVY01000066
[FJVY] metagenome; soil
2011
1935
-
Met
CAT
[ENA]
¢þ
>WENV170565559
FJVY01000392
[FJVY] metagenome; soil
2032
1942
-
Ser
GGA
[ENA]
¢þ
>WENV170565564
FJVY01000718
[FJVY] metagenome; soil
2122
2196
+
His
GTG
[ENA]
¢þ
>WENV170565563
FJVY01000630
[FJVY] metagenome; soil
2123
2198
+
Thr
TGT
[ENA]
¢þ
>WENV170565551
FJVY01000072
[FJVY] metagenome; soil
2208
2293
+
Leu
CAG
[ENA]
¢þ
>WENV170565561
FJVY01000555
[FJVY] metagenome; soil
2359
2285
-
Cys
GCA
[ENA]
¢þ
>WENV170565547
FJVY01000061
[FJVY] metagenome; soil
2391
2480
+
Ser
GGA
[ENA]
¢þ
>WENV170565562
FJVY01000598
[FJVY] metagenome; soil
2430
2513
+
Tyr
GTA
[ENA]
¢þ
>WENV170565534
FJVY01000019
[FJVY] metagenome; soil
2602
2678
+
Arg
GCG
[ENA]
¢þ
>WENV170565546
FJVY01000059
[FJVY] metagenome; soil
3115
3191
+
Lys
CTT
[ENA]
¢þ
>WENV170565558
FJVY01000357
[FJVY] metagenome; soil
3230
3154
-
Pro
CGG
[ENA]
¢þ
>WENV170565556
FJVY01000082
[FJVY] metagenome; soil
3721
3796
+
Phe
GAA
[ENA]
¢þ
>WENV170565535
FJVY01000019
[FJVY] metagenome; soil
4154
4245
+
Ser
CGA
[ENA]
¢þ
>WENV170565542
FJVY01000045
[FJVY] metagenome; soil
5418
5343
-
Met
CAT
[ENA]
¢þ
>WENV170565549
FJVY01000066
[FJVY] metagenome; soil
5544
5468
-
Met
CAT
[ENA]
¢þ
>WENV170565552
FJVY01000073
[FJVY] metagenome; soil
7374
7450
+
Lys
TTT
[ENA]
¢þ
>WENV170565540
FJVY01000045
[FJVY] metagenome; soil
7653
7729
+
Met
CAT
[ENA]
¢þ
>WENV170565548
FJVY01000066
[FJVY] metagenome; soil
7773
7848
+
Met
CAT
[ENA]
¢þ
>WENV170565543
FJVY01000047
[FJVY] metagenome; soil
8915
8991
+
Ala
GGC
[ENA]
¢þ
>WENV170565538
FJVY01000024
[FJVY] metagenome; soil
10441
10364
-
His
GTG
[ENA]
¢þ
>WENV170565541
FJVY01000045
[FJVY] metagenome; soil
11186
11262
+
Met
CAT
[ENA]
¢þ
>WENV170565531
FJVY01000014
[FJVY] metagenome; soil
14208
14134
-
Glu
TTC
[ENA]
¢þ
>WENV170565544
FJVY01000049
[FJVY] metagenome; soil
14357
14433
+
Ala
GGC
[ENA]
¢þ
>WENV170565537
FJVY01000024
[FJVY] metagenome; soil
14412
14336
-
Arg
TCT
[ENA]
¢þ
>WENV170565536
FJVY01000024
[FJVY] metagenome; soil
14490
14416
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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