This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FJWA] metagenome; soil
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565656
FJWA01005757
[FJWA] metagenome; soil
24
94
+
Gly
GCC
[ENA]
¢þ
>WENV170565664
FJWA01006231
[FJWA] metagenome; soil
71
1
-
Gly
GCC
[ENA]
¢þ
>WENV170565687
FJWA01008837
[FJWA] metagenome; soil
82
1
-
Ser
CGA
[ENA]
¢þ
>WENV170565667
FJWA01006283
[FJWA] metagenome; soil
82
152
+
Gly
GCC
[ENA]
¢þ
>WENV170565644
FJWA01003044
[FJWA] metagenome; soil
91
10
-
Ser
AGA
[ENA]
¢þ
>WENV170565665
FJWA01006263
[FJWA] metagenome; soil
100
29
-
Gly
GCC
[ENA]
¢þ
>WENV170565678
FJWA01007864
[FJWA] metagenome; soil
162
81
-
Ser
AGA
[ENA]
¢þ
>WENV170565655
FJWA01005604
[FJWA] metagenome; soil
232
303
+
Trp
CCA
[ENA]
¢þ
>WENV170565673
FJWA01007227
[FJWA] metagenome; soil
328
248
-
Ser
CGA
[ENA]
¢þ
>WENV170565652
FJWA01005342
[FJWA] metagenome; soil
545
472
-
Val
AAC
[ENA]
¢þ
>WENV170565659
FJWA01005925
[FJWA] metagenome; soil
598
671
+
Arg
TCG
[ENA]
¢þ
>WENV170565694
FJWA01010012
[FJWA] metagenome; soil
622
693
+
Glu
TTC
[ENA]
¢þ
>WENV170565689
FJWA01008916
[FJWA] metagenome; soil
631
715
+
Gln
CTG
[ENA]
¢þ
>WENV170565666
FJWA01006274
[FJWA] metagenome; soil
640
710
+
Gly
GCC
[ENA]
¢þ
>WENV170565642
FJWA01002753
[FJWA] metagenome; soil
640
725
+
Gln
CTG
[ENA]
¢þ
>WENV170565676
FJWA01007507
[FJWA] metagenome; soil
740
668
-
Cys
GCA
[ENA]
¢þ
>WENV170565691
FJWA01009011
[FJWA] metagenome; soil
807
736
-
Thr
AGT
[ENA]
¢þ
>WENV170565647
FJWA01003910
[FJWA] metagenome; soil
899
826
-
Asn
GTT
[ENA]
¢þ
>WENV170565662
FJWA01006229
[FJWA] metagenome; soil
955
1025
+
Gly
GCC
[ENA]
¢þ
>WENV170565684
FJWA01008246
[FJWA] metagenome; soil
1061
991
-
Gly
GCC
[ENA]
¢þ
>WENV170565641
FJWA01002635
[FJWA] metagenome; soil
1131
1058
-
Asn
GTT
[ENA]
¢þ
>WENV170565670
FJWA01006458
[FJWA] metagenome; soil
1142
1212
+
Gly
GCC
[ENA]
¢þ
>WENV170565682
FJWA01008140
[FJWA] metagenome; soil
1230
1157
-
Arg
TCG
[ENA]
¢þ
>WENV170565690
FJWA01009003
[FJWA] metagenome; soil
1294
1204
-
Glu
CTC
[ENA]
¢þ
>WENV170565686
FJWA01008679
[FJWA] metagenome; soil
1308
1381
+
Gly
TCC
[ENA]
¢þ
>WENV170565643
FJWA01002863
[FJWA] metagenome; soil
1446
1376
-
Gly
GCC
[ENA]
¢þ
>WENV170565649
FJWA01004626
[FJWA] metagenome; soil
1460
1538
+
Arg
ACG
[ENA]
¢þ
>WENV170565638
FJWA01001720
[FJWA] metagenome; soil
1509
1579
+
Gly
GCC
[ENA]
¢þ
>WENV170565671
FJWA01006557
[FJWA] metagenome; soil
1731
1653
-
Val
AAC
[ENA]
¢þ
>WENV170565688
FJWA01008907
[FJWA] metagenome; soil
1894
1821
-
Asn
GTT
[ENA]
¢þ
>WENV170565646
FJWA01003700
[FJWA] metagenome; soil
1961
1883
-
Arg
ACG
[ENA]
¢þ
>WENV170565677
FJWA01007627
[FJWA] metagenome; soil
2068
1997
-
Met
CAT
[ENA]
¢þ
>WENV170565675
FJWA01007447
[FJWA] metagenome; soil
2097
2167
+
Gly
GCC
[ENA]
¢þ
>WENV170565651
FJWA01005311
[FJWA] metagenome; soil
2124
2040
-
Gln
CTG
[ENA]
¢þ
>WENV170565672
FJWA01007181
[FJWA] metagenome; soil
2224
2151
-
Val
AAC
[ENA]
¢þ
>WENV170565658
FJWA01005886
[FJWA] metagenome; soil
2346
2426
+
Ser
CGA
[ENA]
¢þ
>WENV170565669
FJWA01006445
[FJWA] metagenome; soil
2556
2485
-
Thr
AGT
[ENA]
¢þ
>WENV170565653
FJWA01005408
[FJWA] metagenome; soil
2579
2660
+
Ser
AGA
[ENA]
¢þ
>WENV170565636
FJWA01000530
[FJWA] metagenome; soil
2592
2522
-
Gly
GCC
[ENA]
¢þ
>WENV170565685
FJWA01008312
[FJWA] metagenome; soil
2639
2710
+
Gly
TCC
[ENA]
¢þ
>WENV170565674
FJWA01007387
[FJWA] metagenome; soil
2695
2622
-
Cys
GCA
[ENA]
¢þ
>WENV170565681
FJWA01007937
[FJWA] metagenome; soil
2777
2703
-
Ala
TGC
[ENA]
¢þ
>WENV170565679
FJWA01007897
[FJWA] metagenome; soil
2880
2807
-
Asn
GTT
[ENA]
¢þ
>WENV170565680
FJWA01007937
[FJWA] metagenome; soil
2932
2858
-
Ile
GAT
[ENA]
¢þ
>WENV170565663
FJWA01006229
[FJWA] metagenome; soil
2934
2864
-
Gly
GCC
[ENA]
¢þ
>WENV170565693
FJWA01009749
[FJWA] metagenome; soil
2978
3051
+
Asn
GTT
[ENA]
¢þ
>WENV170565640
FJWA01002514
[FJWA] metagenome; soil
3009
2936
-
Val
AAC
[ENA]
¢þ
>WENV170565661
FJWA01006108
[FJWA] metagenome; soil
3505
3434
-
Glu
TTC
[ENA]
¢þ
>WENV170565660
FJWA01006037
[FJWA] metagenome; soil
3577
3650
+
Val
AAC
[ENA]
¢þ
>WENV170565650
FJWA01005143
[FJWA] metagenome; soil
3606
3525
-
Ser
AGA
[ENA]
¢þ
>WENV170565645
FJWA01003188
[FJWA] metagenome; soil
3736
3655
-
Ser
AGA
[ENA]
¢þ
>WENV170565692
FJWA01009296
[FJWA] metagenome; soil
4166
4091
-
Val
AAC
[ENA]
¢þ
>WENV170565637
FJWA01001550
[FJWA] metagenome; soil
4185
4255
+
Gly
GCC
[ENA]
¢þ
>WENV170565657
FJWA01005819
[FJWA] metagenome; soil
4205
4120
-
Gln
CTG
[ENA]
¢þ
>WENV170565648
FJWA01004146
[FJWA] metagenome; soil
4530
4459
-
Arg
ACG
[ENA]
¢þ
>WENV170565654
FJWA01005597
[FJWA] metagenome; soil
4824
4752
-
Trp
CCA
[ENA]
¢þ
>WENV170565668
FJWA01006315
[FJWA] metagenome; soil
4851
4781
-
Gly
GCC
[ENA]
¢þ
>WENV170565634
FJWA01000196
[FJWA] metagenome; soil
4852
4925
+
Val
AAC
[ENA]
¢þ
>WENV170565683
FJWA01008209
[FJWA] metagenome; soil
5457
5386
-
Glu
CTC
[ENA]
¢þ
>WENV170565635
FJWA01000479
[FJWA] metagenome; soil
6541
6466
-
Trp
CCA
[ENA]
¢þ
>WENV170565639
FJWA01002185
[FJWA] metagenome; soil
6680
6753
+
Asn
GTT
[ENA]
¢þ
>WENV170565633
FJWA01000162
[FJWA] metagenome; soil
11117
11044
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK