This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FLRM] metagenome; saliva
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180003624
FLRM01020084
[FLRM] metagenome; saliva
1
74
+
Asn
GTT
[ENA]
¢þ
>WENV180003612
FLRM01010384
[FLRM] metagenome; saliva
1
76
+
Phe
GAA
[ENA]
¢þ
>WENV180003621
FLRM01015795
[FLRM] metagenome; saliva
4
78
+
Gln
TTG
[ENA]
¢þ
>WENV180003598
FLRM01002501
[FLRM] metagenome; saliva
4
88
+
Leu
CAA
[ENA]
¢þ
>WENV180003607
FLRM01007092
[FLRM] metagenome; saliva
8
84
+
Pro
CGG
[ENA]
¢þ
>WENV180003602
FLRM01003300
[FLRM] metagenome; saliva
10
83
+
Glu
CTC
[ENA]
¢þ
>WENV180003605
FLRM01004360
[FLRM] metagenome; saliva
19
94
+
Lys
TTT
[ENA]
¢þ
>WENV180003644
FLRM01040589
[FLRM] metagenome; saliva
23
107
+
Leu
TAG
[ENA]
¢þ
>WENV180003601
FLRM01003060
[FLRM] metagenome; saliva
25
99
+
Val
TAC
[ENA]
¢þ
>WENV180003610
FLRM01009774
[FLRM] metagenome; saliva
32
107
+
Ile2
CAT
[ENA]
¢þ
>WENV180003613
FLRM01010676
[FLRM] metagenome; saliva
39
115
+
Ile
GAT
[ENA]
¢þ
>WENV180003633
FLRM01026712
[FLRM] metagenome; saliva
50
135
+
Leu
GAG
[ENA]
¢þ
>WENV180003623
FLRM01019296
[FLRM] metagenome; saliva
51
127
+
Pro
TGG
[ENA]
¢þ
>WENV180003630
FLRM01024087
[FLRM] metagenome; saliva
61
135
+
Ile2
CAT
[ENA]
¢þ
>WENV180003635
FLRM01030884
[FLRM] metagenome; saliva
66
137
+
Gln
TTG
[ENA]
¢þ
>WENV180003645
FLRM01040814
[FLRM] metagenome; saliva
66
148
+
Tyr
GTA
[ENA]
¢þ
>WENV180003632
FLRM01026186
[FLRM] metagenome; saliva
70
162
+
Ser
GCT
[ENA]
¢þ
>WENV180003593
FLRM01000900
[FLRM] metagenome; saliva
73
1
-
Lys
CTT
[ENA]
¢þ
>WENV180003625
FLRM01020708
[FLRM] metagenome; saliva
73
148
+
Val
TAC
[ENA]
¢þ
>WENV180003616
FLRM01012445
[FLRM] metagenome; saliva
76
1
-
Arg
TCT
[ENA]
¢þ
>WENV180003636
FLRM01033115
[FLRM] metagenome; saliva
77
1
-
fMet
CAT
[ENA]
¢þ
>WENV180003622
FLRM01016214
[FLRM] metagenome; saliva
78
1
-
Asp
GTC
[ENA]
¢þ
>WENV180003637
FLRM01033664
[FLRM] metagenome; saliva
78
154
+
Ile2
CAT
[ENA]
¢þ
>WENV180003634
FLRM01028627
[FLRM] metagenome; saliva
80
4
-
Asp
GTC
[ENA]
¢þ
>WENV180003639
FLRM01034123
[FLRM] metagenome; saliva
87
13
-
Glu
TTC
[ENA]
¢þ
>WENV180003587
FLRM01000308
[FLRM] metagenome; saliva
90
15
-
Glu
CTC
[ENA]
¢þ
>WENV180003641
FLRM01036826
[FLRM] metagenome; saliva
90
173
+
Tyr
GTA
[ENA]
¢þ
>WENV180003594
FLRM01001073
[FLRM] metagenome; saliva
97
173
+
Ile
GAT
[ENA]
¢þ
>WENV180003617
FLRM01012718
[FLRM] metagenome; saliva
98
171
+
Arg
CCG
[ENA]
¢þ
>WENV180003626
FLRM01021183
[FLRM] metagenome; saliva
100
11
-
Ser
TGA
[ENA]
¢þ
>WENV180003627
FLRM01022008
[FLRM] metagenome; saliva
103
31
-
Glu
TTC
[ENA]
¢þ
>WENV180003628
FLRM01022329
[FLRM] metagenome; saliva
104
28
-
Met
CAT
[ENA]
¢þ
>WENV180003615
FLRM01011246
[FLRM] metagenome; saliva
104
192
+
Ser
GGA
[ENA]
¢þ
>WENV180003608
FLRM01007910
[FLRM] metagenome; saliva
105
19
-
Leu
GAG
[ENA]
¢þ
>WENV180003611
FLRM01009781
[FLRM] metagenome; saliva
108
35
-
Ala
TGC
[ENA]
¢þ
>WENV180003584
FLRM01000230
[FLRM] metagenome; saliva
111
36
-
Arg
ACG
[ENA]
¢þ
>WENV180003631
FLRM01024498
[FLRM] metagenome; saliva
117
191
+
Val
TAC
[ENA]
¢þ
>WENV180003614
FLRM01010676
[FLRM] metagenome; saliva
121
196
+
Ala
TGC
[ENA]
¢þ
>WENV180003600
FLRM01003013
[FLRM] metagenome; saliva
124
50
-
Ile
GAT
[ENA]
¢þ
>WENV180003629
FLRM01023946
[FLRM] metagenome; saliva
129
56
-
Gly
TCC
[ENA]
¢þ
>WENV180003591
FLRM01000716
[FLRM] metagenome; saliva
148
75
-
Glu
TTC
[ENA]
¢þ
>WENV180003609
FLRM01008662
[FLRM] metagenome; saliva
150
73
-
Pro
TGG
[ENA]
¢þ
>WENV180003592
FLRM01000865
[FLRM] metagenome; saliva
164
90
-
Thr
TGT
[ENA]
¢þ
>WENV180003640
FLRM01036334
[FLRM] metagenome; saliva
172
88
-
Tyr
GTA
[ENA]
¢þ
>WENV180003606
FLRM01007025
[FLRM] metagenome; saliva
184
110
-
Arg
CCG
[ENA]
¢þ
>WENV180003586
FLRM01000308
[FLRM] metagenome; saliva
184
112
-
Gln
CTG
[ENA]
¢þ
>WENV180003589
FLRM01000449
[FLRM] metagenome; saliva
195
104
-
Ser
GCT
[ENA]
¢þ
>WENV180003620
FLRM01015783
[FLRM] metagenome; saliva
197
121
-
Val
GAC
[ENA]
¢þ
>WENV180003595
FLRM01001073
[FLRM] metagenome; saliva
198
273
+
Ala
TGC
[ENA]
¢þ
>WENV180003642
FLRM01036826
[FLRM] metagenome; saliva
210
283
+
Gly
TCC
[ENA]
¢þ
>WENV180003619
FLRM01014653
[FLRM] metagenome; saliva
217
142
-
Thr
GGT
[ENA]
¢þ
>WENV180003596
FLRM01001113
[FLRM] metagenome; saliva
221
292
+
Gln
TTG
[ENA]
¢þ
>WENV180003604
FLRM01004315
[FLRM] metagenome; saliva
238
164
-
Thr
CGT
[ENA]
¢þ
>WENV180003585
FLRM01000241
[FLRM] metagenome; saliva
281
193
-
Ser
TGA
[ENA]
¢þ
>WENV180003603
FLRM01003300
[FLRM] metagenome; saliva
282
356
+
Val
CAC
[ENA]
¢þ
>WENV180003618
FLRM01014653
[FLRM] metagenome; saliva
295
221
-
Gly
TCC
[ENA]
¢þ
>WENV180003643
FLRM01036826
[FLRM] metagenome; saliva
295
369
+
Thr
GGT
[ENA]
¢þ
>WENV180003638
FLRM01034032
[FLRM] metagenome; saliva
306
231
-
Glu
TTC
[ENA]
¢þ
>WENV180003597
FLRM01002459
[FLRM] metagenome; saliva
374
448
+
Arg
CCT
[ENA]
¢þ
>WENV180003590
FLRM01000700
[FLRM] metagenome; saliva
535
461
-
fMet
CAT
[ENA]
¢þ
>WENV180003588
FLRM01000378
[FLRM] metagenome; saliva
545
619
+
Ile
GAT
[ENA]
¢þ
>WENV180003599
FLRM01002678
[FLRM] metagenome; saliva
559
484
-
Trp
CCA
[ENA]
¢þ
>WENV180003583
FLRM01000055
[FLRM] metagenome; saliva
623
550
-
Trp
CCA
[ENA]
¢þ
>WENV180003579
FLRM01000041
[FLRM] metagenome; saliva
692
768
+
Ile
GAT
[ENA]
¢þ
>WENV180003580
FLRM01000041
[FLRM] metagenome; saliva
774
849
+
Ala
TGC
[ENA]
¢þ
>WENV180003581
FLRM01000041
[FLRM] metagenome; saliva
879
955
+
Ile
GAT
[ENA]
¢þ
>WENV180003582
FLRM01000041
[FLRM] metagenome; saliva
961
1036
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK