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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[FLRO] metagenome; saliva
HIT:
131 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180003755
FLRO01019758
[FLRO] metagenome; saliva
1
74
+
Glu
CTC
[ENA]
¢þ
>WENV180003711
FLRO01000065
[FLRO] metagenome; saliva
1
75
+
Ile
GAT
[ENA]
¢þ
>WENV180003743
FLRO01014887
[FLRO] metagenome; saliva
1
85
+
Leu
TAG
[ENA]
¢þ
>WENV180003797
FLRO01058561
[FLRO] metagenome; saliva
2
77
+
Val
TAC
[ENA]
¢þ
>WENV180003761
FLRO01026117
[FLRO] metagenome; saliva
2
90
+
Ser
TGA
[ENA]
¢þ
>WENV180003762
FLRO01027995
[FLRO] metagenome; saliva
4
78
+
Arg
CCG
[ENA]
¢þ
>WENV180003786
FLRO01042408
[FLRO] metagenome; saliva
23
110
+
Ser
TGA
[ENA]
¢þ
>WENV180003724
FLRO01005627
[FLRO] metagenome; saliva
24
100
+
fMet
CAT
[ENA]
¢þ
>WENV180003745
FLRO01016710
[FLRO] metagenome; saliva
29
103
+
Pro
TGG
[ENA]
¢þ
>WENV180003791
FLRO01051132
[FLRO] metagenome; saliva
31
105
+
Gly
TCC
[ENA]
¢þ
>WENV180003801
FLRO01062221
[FLRO] metagenome; saliva
37
110
+
Gly
CCC
[ENA]
¢þ
>WENV180003776
FLRO01041286
[FLRO] metagenome; saliva
38
113
+
fMet
CAT
[ENA]
¢þ
>WENV180003775
FLRO01040889
[FLRO] metagenome; saliva
40
133
+
Ser
GCT
[ENA]
¢þ
>WENV180003830
FLRO01073774
[FLRO] metagenome; saliva
41
117
+
Pro
TGG
[ENA]
¢þ
>WENV180003726
FLRO01005924
[FLRO] metagenome; saliva
45
121
+
Val
GAC
[ENA]
¢þ
>WENV180003767
FLRO01031547
[FLRO] metagenome; saliva
50
123
+
Ile2
CAT
[ENA]
¢þ
>WENV180003765
FLRO01028401
[FLRO] metagenome; saliva
52
127
+
Asn
GTT
[ENA]
¢þ
>WENV180003768
FLRO01033250
[FLRO] metagenome; saliva
52
128
+
Pro
TGG
[ENA]
¢þ
>WENV180003748
FLRO01019385
[FLRO] metagenome; saliva
53
126
+
fMet
CAT
[ENA]
¢þ
>WENV180003728
FLRO01006162
[FLRO] metagenome; saliva
53
139
+
Leu
TAG
[ENA]
¢þ
>WENV180003739
FLRO01012632
[FLRO] metagenome; saliva
54
130
+
Ile
GAT
[ENA]
¢þ
>WENV180003789
FLRO01044026
[FLRO] metagenome; saliva
55
129
+
Gly
TCC
[ENA]
¢þ
>WENV180003734
FLRO01007406
[FLRO] metagenome; saliva
60
136
+
Arg
CCT
[ENA]
¢þ
>WENV180003722
FLRO01005265
[FLRO] metagenome; saliva
71
144
+
Thr
CGT
[ENA]
¢þ
>WENV180003723
FLRO01005434
[FLRO] metagenome; saliva
73
2
-
fMet
CAT
[ENA]
¢þ
>WENV180003735
FLRO01007520
[FLRO] metagenome; saliva
74
1
-
Phe
GAA
[ENA]
¢þ
>WENV180003746
FLRO01017452
[FLRO] metagenome; saliva
74
1
-
Arg
CCT
[ENA]
¢þ
>WENV180003795
FLRO01055748
[FLRO] metagenome; saliva
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV180003796
FLRO01056905
[FLRO] metagenome; saliva
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV180003811
FLRO01072364
[FLRO] metagenome; saliva
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV180003774
FLRO01040684
[FLRO] metagenome; saliva
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV180003747
FLRO01018042
[FLRO] metagenome; saliva
76
5
-
Cys
GCA
[ENA]
¢þ
>WENV180003792
FLRO01051606
[FLRO] metagenome; saliva
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180003799
FLRO01058610
[FLRO] metagenome; saliva
80
5
-
fMet
CAT
[ENA]
¢þ
>WENV180003788
FLRO01043985
[FLRO] metagenome; saliva
81
7
-
Pro
GGG
[ENA]
¢þ
>WENV180003736
FLRO01008553
[FLRO] metagenome; saliva
82
173
+
Ser
GCT
[ENA]
¢þ
>WENV180003798
FLRO01058561
[FLRO] metagenome; saliva
83
159
+
Asp
GTC
[ENA]
¢þ
>WENV180003832
FLRO01076775
[FLRO] metagenome; saliva
84
2
-
Leu
CAA
[ENA]
¢þ
>WENV180003800
FLRO01061463
[FLRO] metagenome; saliva
84
8
-
Lys
TTT
[ENA]
¢þ
>WENV180003725
FLRO01005919
[FLRO] metagenome; saliva
86
15
-
Trp
CCA
[ENA]
¢þ
>WENV180003829
FLRO01073639
[FLRO] metagenome; saliva
92
3
-
Ser
GCT
[ENA]
¢þ
>WENV180003742
FLRO01014301
[FLRO] metagenome; saliva
92
4
-
Ser
TGA
[ENA]
¢þ
>WENV180003731
FLRO01006496
[FLRO] metagenome; saliva
93
22
-
Gln
TTG
[ENA]
¢þ
>WENV180003784
FLRO01042151
[FLRO] metagenome; saliva
95
21
-
Glu
TTC
[ENA]
¢þ
>WENV180003803
FLRO01063376
[FLRO] metagenome; saliva
97
10
-
Ser
GCT
[ENA]
¢þ
>WENV180003737
FLRO01010460
[FLRO] metagenome; saliva
100
26
-
Ile
GAT
[ENA]
¢þ
>WENV180003756
FLRO01019838
[FLRO] metagenome; saliva
101
175
+
Ile
GAT
[ENA]
¢þ
>WENV180003772
FLRO01038328
[FLRO] metagenome; saliva
102
196
+
SeC
TCA
[ENA]
¢þ
>WENV180003719
FLRO01003278
[FLRO] metagenome; saliva
103
29
-
Cys
GCA
[ENA]
¢þ
>WENV180003764
FLRO01028391
[FLRO] metagenome; saliva
105
29
-
Met
CAT
[ENA]
¢þ
>WENV180003807
FLRO01069145
[FLRO] metagenome; saliva
106
34
-
Thr
GGT
[ENA]
¢þ
>WENV180003712
FLRO01000065
[FLRO] metagenome; saliva
108
182
+
Ala
TGC
[ENA]
¢þ
>WENV180003763
FLRO01028190
[FLRO] metagenome; saliva
110
35
-
Arg
TCT
[ENA]
¢þ
>WENV180003716
FLRO01001442
[FLRO] metagenome; saliva
111
39
-
Gln
CTG
[ENA]
¢þ
>WENV180003785
FLRO01042258
[FLRO] metagenome; saliva
115
43
-
Thr
GGT
[ENA]
¢þ
>WENV180003835
FLRO01079705
[FLRO] metagenome; saliva
117
42
-
Ala
GGC
[ENA]
¢þ
>WENV180003773
FLRO01038403
[FLRO] metagenome; saliva
122
49
-
Ala
GGC
[ENA]
¢þ
>WENV180003831
FLRO01074164
[FLRO] metagenome; saliva
125
53
-
Gln
TTG
[ENA]
¢þ
>WENV180003790
FLRO01044681
[FLRO] metagenome; saliva
128
52
-
Met
CAT
[ENA]
¢þ
>WENV180003794
FLRO01055158
[FLRO] metagenome; saliva
130
56
-
Gln
TTG
[ENA]
¢þ
>WENV180003749
FLRO01019385
[FLRO] metagenome; saliva
130
202
+
Phe
GAA
[ENA]
¢þ
>WENV180003758
FLRO01020543
[FLRO] metagenome; saliva
131
56
-
Ile
TAT
[ENA]
¢þ
>WENV180003733
FLRO01006817
[FLRO] metagenome; saliva
132
50
-
Leu
CAA
[ENA]
¢þ
>WENV180003833
FLRO01077700
[FLRO] metagenome; saliva
132
57
-
Asp
GTC
[ENA]
¢þ
>WENV180003802
FLRO01062769
[FLRO] metagenome; saliva
134
60
-
Trp
CCA
[ENA]
¢þ
>WENV180003740
FLRO01012632
[FLRO] metagenome; saliva
135
210
+
Ala
TGC
[ENA]
¢þ
>WENV180003760
FLRO01026052
[FLRO] metagenome; saliva
138
63
-
fMet
CAT
[ENA]
¢þ
>WENV180003812
FLRO01072409
[FLRO] metagenome; saliva
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV180003766
FLRO01029592
[FLRO] metagenome; saliva
142
68
-
Pro
CGG
[ENA]
¢þ
>WENV180003777
FLRO01041286
[FLRO] metagenome; saliva
146
221
+
Thr
GGT
[ENA]
¢þ
>WENV180003729
FLRO01006162
[FLRO] metagenome; saliva
147
237
+
Tyr
GTA
[ENA]
¢þ
>WENV180003787
FLRO01043627
[FLRO] metagenome; saliva
150
76
-
His
GTG
[ENA]
¢þ
>WENV180003808
FLRO01070872
[FLRO] metagenome; saliva
150
224
+
Ile
GAT
[ENA]
¢þ
>WENV180003809
FLRO01072052
[FLRO] metagenome; saliva
153
80
-
Cys
GCA
[ENA]
¢þ
>WENV180003744
FLRO01015014
[FLRO] metagenome; saliva
160
88
-
Glu
TTC
[ENA]
¢þ
>WENV180003805
FLRO01067131
[FLRO] metagenome; saliva
168
72
-
SeC
TCA
[ENA]
¢þ
>WENV180003810
FLRO01072364
[FLRO] metagenome; saliva
168
83
-
Ser
GCT
[ENA]
¢þ
>WENV180003828
FLRO01073639
[FLRO] metagenome; saliva
172
97
-
Ile
GAT
[ENA]
¢þ
>WENV180003720
FLRO01004789
[FLRO] metagenome; saliva
173
97
-
Pro
TGG
[ENA]
¢þ
>WENV180003778
FLRO01041585
[FLRO] metagenome; saliva
175
250
+
Arg
TCT
[ENA]
¢þ
>WENV180003718
FLRO01003260
[FLRO] metagenome; saliva
177
106
-
Cys
GCA
[ENA]
¢þ
>WENV180003783
FLRO01042151
[FLRO] metagenome; saliva
182
106
-
Ile2
CAT
[ENA]
¢þ
>WENV180003717
FLRO01002736
[FLRO] metagenome; saliva
182
108
-
Thr
CGT
[ENA]
¢þ
>WENV180003804
FLRO01067109
[FLRO] metagenome; saliva
194
120
-
Ile2
CAT
[ENA]
¢þ
>WENV180003715
FLRO01000840
[FLRO] metagenome; saliva
196
269
+
Trp
CCA
[ENA]
¢þ
>WENV180003834
FLRO01079705
[FLRO] metagenome; saliva
200
124
-
Met
CAT
[ENA]
¢þ
>WENV180003770
FLRO01035921
[FLRO] metagenome; saliva
201
126
-
Arg
ACG
[ENA]
¢þ
>WENV180003769
FLRO01035139
[FLRO] metagenome; saliva
207
119
-
Ser
GGA
[ENA]
¢þ
>WENV180003750
FLRO01019385
[FLRO] metagenome; saliva
214
296
+
Tyr
GTA
[ENA]
¢þ
>WENV180003806
FLRO01068732
[FLRO] metagenome; saliva
221
145
-
Ile
GAT
[ENA]
¢þ
>WENV180003713
FLRO01000676
[FLRO] metagenome; saliva
224
151
-
Pro
TGG
[ENA]
¢þ
>WENV180003732
FLRO01006548
[FLRO] metagenome; saliva
226
155
-
Gln
TTG
[ENA]
¢þ
>WENV180003793
FLRO01055158
[FLRO] metagenome; saliva
230
155
-
His
GTG
[ENA]
¢þ
>WENV180003782
FLRO01042151
[FLRO] metagenome; saliva
264
188
-
Arg
TCT
[ENA]
¢þ
>WENV180003771
FLRO01036097
[FLRO] metagenome; saliva
266
192
-
Thr
TGT
[ENA]
¢þ
>WENV180003827
FLRO01073639
[FLRO] metagenome; saliva
276
206
-
Gly
TCC
[ENA]
¢þ
>WENV180003714
FLRO01000817
[FLRO] metagenome; saliva
289
363
+
Pro
GGG
[ENA]
¢þ
>WENV180003738
FLRO01011237
[FLRO] metagenome; saliva
294
208
-
Leu
GAG
[ENA]
¢þ
>WENV180003751
FLRO01019385
[FLRO] metagenome; saliva
299
371
+
Trp
CCA
[ENA]
¢þ
>WENV180003757
FLRO01019838
[FLRO] metagenome; saliva
319
392
+
Ala
TGC
[ENA]
¢þ
>WENV180003826
FLRO01073639
[FLRO] metagenome; saliva
369
295
-
Phe
GAA
[ENA]
¢þ
>WENV180003781
FLRO01042151
[FLRO] metagenome; saliva
378
303
-
Lys
TTT
[ENA]
¢þ
>WENV180003752
FLRO01019385
[FLRO] metagenome; saliva
384
458
+
His
GTG
[ENA]
¢þ
>WENV180003727
FLRO01006082
[FLRO] metagenome; saliva
394
466
+
Arg
CCT
[ENA]
¢þ
>WENV180003825
FLRO01073639
[FLRO] metagenome; saliva
445
372
-
fMet
CAT
[ENA]
¢þ
>WENV180003780
FLRO01042151
[FLRO] metagenome; saliva
460
385
-
Gly
TCC
[ENA]
¢þ
>WENV180003753
FLRO01019385
[FLRO] metagenome; saliva
470
543
+
Gln
TTG
[ENA]
¢þ
>WENV180003741
FLRO01013626
[FLRO] metagenome; saliva
513
587
+
Lys
CTT
[ENA]
¢þ
>WENV180003824
FLRO01073639
[FLRO] metagenome; saliva
547
458
-
Ser
TGA
[ENA]
¢þ
>WENV180003754
FLRO01019385
[FLRO] metagenome; saliva
551
636
+
Leu
CAA
[ENA]
¢þ
>WENV180003779
FLRO01042151
[FLRO] metagenome; saliva
563
487
-
fMet
CAT
[ENA]
¢þ
>WENV180003759
FLRO01023082
[FLRO] metagenome; saliva
610
681
+
Arg
CCT
[ENA]
¢þ
>WENV180003823
FLRO01073639
[FLRO] metagenome; saliva
634
559
-
Ile2
CAT
[ENA]
¢þ
>WENV180003730
FLRO01006269
[FLRO] metagenome; saliva
638
714
+
Asn
GTT
[ENA]
¢þ
>WENV180003822
FLRO01073639
[FLRO] metagenome; saliva
721
646
-
Met
CAT
[ENA]
¢þ
>WENV180003821
FLRO01073639
[FLRO] metagenome; saliva
800
725
-
Pro
TGG
[ENA]
¢þ
>WENV180003820
FLRO01073639
[FLRO] metagenome; saliva
888
815
-
Arg
ACG
[ENA]
¢þ
>WENV180003709
FLRO01000050
[FLRO] metagenome; saliva
975
1048
+
Glu
TTC
[ENA]
¢þ
>WENV180003819
FLRO01073639
[FLRO] metagenome; saliva
985
900
-
Leu
TAA
[ENA]
¢þ
>WENV180003721
FLRO01005108
[FLRO] metagenome; saliva
1006
935
-
Gln
TTG
[ENA]
¢þ
>WENV180003818
FLRO01073639
[FLRO] metagenome; saliva
1064
993
-
Gly
GCC
[ENA]
¢þ
>WENV180003817
FLRO01073639
[FLRO] metagenome; saliva
1159
1087
-
Thr
TGT
[ENA]
¢þ
>WENV180003816
FLRO01073639
[FLRO] metagenome; saliva
1260
1177
-
Leu
TAG
[ENA]
¢þ
>WENV180003815
FLRO01073639
[FLRO] metagenome; saliva
1337
1265
-
Lys
TTT
[ENA]
¢þ
>WENV180003814
FLRO01073639
[FLRO] metagenome; saliva
1434
1362
-
Asp
GTC
[ENA]
¢þ
>WENV180003708
FLRO01000007
[FLRO] metagenome; saliva
1467
1393
-
Ala
TGC
[ENA]
¢þ
>WENV180003813
FLRO01073639
[FLRO] metagenome; saliva
1509
1437
-
Val
TAC
[ENA]
¢þ
>WENV180003707
FLRO01000007
[FLRO] metagenome; saliva
1558
1484
-
Ile
GAT
[ENA]
¢þ
>WENV180003837
FLRO01082470
[FLRO] metagenome; saliva
1634
1559
-
Ala
TGC
[ENA]
¢þ
>WENV180003836
FLRO01082470
[FLRO] metagenome; saliva
1729
1653
-
Ile
GAT
[ENA]
¢þ
>WENV180003710
FLRO01000050
[FLRO] metagenome; saliva
3083
3157
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK