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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[FLYJ] hot springs metagenome; Sediment
HIT:
119 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170573155
FLYJ01001396
[FLYJ] hot springs metagenome; Sediment
4
80
+
Arg
ACG
[ENA]
¢þ
>WENV170573190
FLYJ01003324
[FLYJ] hot springs metagenome; Sediment
28
104
+
Met
CAT
[ENA]
¢þ
>WENV170573164
FLYJ01002211
[FLYJ] hot springs metagenome; Sediment
42
117
+
Lys
CTT
[ENA]
¢þ
>WENV170573147
FLYJ01000795
[FLYJ] hot springs metagenome; Sediment
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV170573144
FLYJ01000677
[FLYJ] hot springs metagenome; Sediment
78
3
-
Glu
TTC
[ENA]
¢þ
>WENV170573115
FLYJ01000055
[FLYJ] hot springs metagenome; Sediment
102
178
+
Asp
GTC
[ENA]
¢þ
>WENV170573128
FLYJ01000193
[FLYJ] hot springs metagenome; Sediment
122
198
+
Ile
GAT
[ENA]
¢þ
>WENV170573195
FLYJ01003531
[FLYJ] hot springs metagenome; Sediment
131
47
-
Leu
TAG
[ENA]
¢þ
>WENV170573107
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
140
230
+
Leu
TAA
[ENA]
¢þ
>WENV170573204
FLYJ01004463
[FLYJ] hot springs metagenome; Sediment
158
83
-
Ala
CGC
[ENA]
¢þ
>WENV170573132
FLYJ01000250
[FLYJ] hot springs metagenome; Sediment
162
77
-
Tyr
GTA
[ENA]
¢þ
>WENV170573152
FLYJ01001081
[FLYJ] hot springs metagenome; Sediment
169
95
-
Thr
GGT
[ENA]
¢þ
>WENV170573145
FLYJ01000710
[FLYJ] hot springs metagenome; Sediment
182
257
+
Ala
GGC
[ENA]
¢þ
>WENV170573196
FLYJ01003578
[FLYJ] hot springs metagenome; Sediment
184
260
+
Arg
ACG
[ENA]
¢þ
>WENV170573143
FLYJ01000677
[FLYJ] hot springs metagenome; Sediment
192
117
-
Ala
GGC
[ENA]
¢þ
>WENV170573120
FLYJ01000087
[FLYJ] hot springs metagenome; Sediment
194
119
-
Glu
TTC
[ENA]
¢þ
>WENV170573184
FLYJ01003061
[FLYJ] hot springs metagenome; Sediment
205
131
-
Thr
GGT
[ENA]
¢þ
>WENV170573201
FLYJ01004065
[FLYJ] hot springs metagenome; Sediment
223
148
-
Phe
GAA
[ENA]
¢þ
>WENV170573129
FLYJ01000193
[FLYJ] hot springs metagenome; Sediment
231
306
+
Ala
TGC
[ENA]
¢þ
>WENV170573156
FLYJ01001638
[FLYJ] hot springs metagenome; Sediment
255
330
+
Glu
TTC
[ENA]
¢þ
>WENV170573151
FLYJ01001081
[FLYJ] hot springs metagenome; Sediment
261
188
-
Gly
TCC
[ENA]
¢þ
>WENV170573146
FLYJ01000710
[FLYJ] hot springs metagenome; Sediment
281
356
+
Glu
TTC
[ENA]
¢þ
>WENV170573189
FLYJ01003285
[FLYJ] hot springs metagenome; Sediment
290
366
+
Pro
CGG
[ENA]
¢þ
>WENV170573183
FLYJ01003061
[FLYJ] hot springs metagenome; Sediment
318
245
-
Gly
TCC
[ENA]
¢þ
>WENV170573172
FLYJ01002539
[FLYJ] hot springs metagenome; Sediment
334
410
+
Gln
TTG
[ENA]
¢þ
>WENV170573119
FLYJ01000087
[FLYJ] hot springs metagenome; Sediment
388
313
-
Ala
GGC
[ENA]
¢þ
>WENV170573150
FLYJ01001081
[FLYJ] hot springs metagenome; Sediment
405
320
-
Tyr
GTA
[ENA]
¢þ
>WENV170573192
FLYJ01003392
[FLYJ] hot springs metagenome; Sediment
434
360
-
Arg
CCT
[ENA]
¢þ
>WENV170573179
FLYJ01002689
[FLYJ] hot springs metagenome; Sediment
448
373
-
Val
TAC
[ENA]
¢þ
>WENV170573182
FLYJ01003004
[FLYJ] hot springs metagenome; Sediment
448
375
-
Gly
CCC
[ENA]
¢þ
>WENV170573205
FLYJ01004504
[FLYJ] hot springs metagenome; Sediment
454
378
-
Val
GAC
[ENA]
¢þ
>WENV170573158
FLYJ01001955
[FLYJ] hot springs metagenome; Sediment
456
532
+
Pro
TGG
[ENA]
¢þ
>WENV170573185
FLYJ01003183
[FLYJ] hot springs metagenome; Sediment
460
387
-
Thr
TGT
[ENA]
¢þ
>WENV170573191
FLYJ01003348
[FLYJ] hot springs metagenome; Sediment
472
547
+
Met
CAT
[ENA]
¢þ
>WENV170573175
FLYJ01002600
[FLYJ] hot springs metagenome; Sediment
482
558
+
Arg
CCG
[ENA]
¢þ
>WENV170573200
FLYJ01003832
[FLYJ] hot springs metagenome; Sediment
504
580
+
Arg
TCT
[ENA]
¢þ
>WENV170573159
FLYJ01001955
[FLYJ] hot springs metagenome; Sediment
556
632
+
Arg
TCT
[ENA]
¢þ
>WENV170573135
FLYJ01000340
[FLYJ] hot springs metagenome; Sediment
562
486
-
Met
CAT
[ENA]
¢þ
>WENV170573171
FLYJ01002536
[FLYJ] hot springs metagenome; Sediment
575
650
+
Lys
TTT
[ENA]
¢þ
>WENV170573186
FLYJ01003244
[FLYJ] hot springs metagenome; Sediment
607
523
-
Leu
CAA
[ENA]
¢þ
>WENV170573177
FLYJ01002640
[FLYJ] hot springs metagenome; Sediment
640
547
-
Ser
GCT
[ENA]
¢þ
>WENV170573142
FLYJ01000662
[FLYJ] hot springs metagenome; Sediment
666
750
+
Leu
GAG
[ENA]
¢þ
>WENV170573178
FLYJ01002673
[FLYJ] hot springs metagenome; Sediment
746
836
+
Ser
GGA
[ENA]
¢þ
>WENV170573198
FLYJ01003782
[FLYJ] hot springs metagenome; Sediment
756
843
+
Ser
TGA
[ENA]
¢þ
>WENV170573188
FLYJ01003260
[FLYJ] hot springs metagenome; Sediment
817
743
-
Val
CAC
[ENA]
¢þ
>WENV170573169
FLYJ01002225
[FLYJ] hot springs metagenome; Sediment
862
789
-
Cys
GCA
[ENA]
¢þ
>WENV170573148
FLYJ01000859
[FLYJ] hot springs metagenome; Sediment
910
835
-
His
GTG
[ENA]
¢þ
>WENV170573207
FLYJ01004648
[FLYJ] hot springs metagenome; Sediment
999
923
-
Pro
GGG
[ENA]
¢þ
>WENV170573168
FLYJ01002225
[FLYJ] hot springs metagenome; Sediment
1034
959
-
Gly
GCC
[ENA]
¢þ
>WENV170573203
FLYJ01004457
[FLYJ] hot springs metagenome; Sediment
1034
1108
+
Arg
CCT
[ENA]
¢þ
>WENV170573167
FLYJ01002225
[FLYJ] hot springs metagenome; Sediment
1207
1132
-
Gly
GCC
[ENA]
¢þ
>WENV170573165
FLYJ01002214
[FLYJ] hot springs metagenome; Sediment
1249
1324
+
His
GTG
[ENA]
¢þ
>WENV170573149
FLYJ01000915
[FLYJ] hot springs metagenome; Sediment
1271
1197
-
Val
CAC
[ENA]
¢þ
>WENV170573209
FLYJ01004863
[FLYJ] hot springs metagenome; Sediment
1281
1205
-
Pro
GGG
[ENA]
¢þ
>WENV170573208
FLYJ01004770
[FLYJ] hot springs metagenome; Sediment
1292
1367
+
Ala
CGC
[ENA]
¢þ
>WENV170573180
FLYJ01002779
[FLYJ] hot springs metagenome; Sediment
1359
1266
-
Ser
GCT
[ENA]
¢þ
>WENV170573199
FLYJ01003818
[FLYJ] hot springs metagenome; Sediment
1500
1575
+
Thr
CGT
[ENA]
¢þ
>WENV170573162
FLYJ01002197
[FLYJ] hot springs metagenome; Sediment
1581
1665
+
Tyr
GTA
[ENA]
¢þ
>WENV170573131
FLYJ01000212
[FLYJ] hot springs metagenome; Sediment
1695
1771
+
Met
CAT
[ENA]
¢þ
>WENV170573163
FLYJ01002197
[FLYJ] hot springs metagenome; Sediment
1708
1781
+
Gly
TCC
[ENA]
¢þ
>WENV170573161
FLYJ01002043
[FLYJ] hot springs metagenome; Sediment
1775
1688
-
Ser
CGA
[ENA]
¢þ
>WENV170573170
FLYJ01002326
[FLYJ] hot springs metagenome; Sediment
1871
1796
-
Arg
CCG
[ENA]
¢þ
>WENV170573213
FLYJ01005362
[FLYJ] hot springs metagenome; Sediment
1905
1981
+
Ile
GAT
[ENA]
¢þ
>WENV170573214
FLYJ01005362
[FLYJ] hot springs metagenome; Sediment
1993
2068
+
Ala
TGC
[ENA]
¢þ
>WENV170573153
FLYJ01001235
[FLYJ] hot springs metagenome; Sediment
2032
1957
-
Trp
CCA
[ENA]
¢þ
>WENV170573197
FLYJ01003671
[FLYJ] hot springs metagenome; Sediment
2079
2169
+
Ser
GGA
[ENA]
¢þ
>WENV170573130
FLYJ01000204
[FLYJ] hot springs metagenome; Sediment
2092
2178
+
Leu
CAG
[ENA]
¢þ
>WENV170573210
FLYJ01004930
[FLYJ] hot springs metagenome; Sediment
2185
2260
+
Thr
CGT
[ENA]
¢þ
>WENV170573160
FLYJ01001994
[FLYJ] hot springs metagenome; Sediment
2371
2446
+
Phe
GAA
[ENA]
¢þ
>WENV170573138
FLYJ01000493
[FLYJ] hot springs metagenome; Sediment
2428
2503
+
Lys
CTT
[ENA]
¢þ
>WENV170573108
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
2581
2656
+
Lys
CTT
[ENA]
¢þ
>WENV170573096
FLYJ01000009
[FLYJ] hot springs metagenome; Sediment
2586
2662
+
Met
CAT
[ENA]
¢þ
>WENV170573139
FLYJ01000493
[FLYJ] hot springs metagenome; Sediment
2624
2698
+
Thr
GGT
[ENA]
¢þ
>WENV170573157
FLYJ01001881
[FLYJ] hot springs metagenome; Sediment
2689
2779
+
Ser
CGA
[ENA]
¢þ
>WENV170573133
FLYJ01000298
[FLYJ] hot springs metagenome; Sediment
2692
2768
+
Ile
GAT
[ENA]
¢þ
>WENV170573134
FLYJ01000298
[FLYJ] hot springs metagenome; Sediment
2866
2941
+
Ala
TGC
[ENA]
¢þ
>WENV170573137
FLYJ01000449
[FLYJ] hot springs metagenome; Sediment
2888
2974
+
Leu
CAA
[ENA]
¢þ
>WENV170573166
FLYJ01002220
[FLYJ] hot springs metagenome; Sediment
2928
3004
+
Asp
GTC
[ENA]
¢þ
>WENV170573202
FLYJ01004304
[FLYJ] hot springs metagenome; Sediment
3040
2964
-
Pro
TGG
[ENA]
¢þ
>WENV170573174
FLYJ01002544
[FLYJ] hot springs metagenome; Sediment
3266
3190
-
Ile
GAT
[ENA]
¢þ
>WENV170573212
FLYJ01005298
[FLYJ] hot springs metagenome; Sediment
3291
3367
+
Met
CAT
[ENA]
¢þ
>WENV170573126
FLYJ01000122
[FLYJ] hot springs metagenome; Sediment
3302
3227
-
Arg
CCG
[ENA]
¢þ
>WENV170573173
FLYJ01002544
[FLYJ] hot springs metagenome; Sediment
3360
3285
-
Ala
TGC
[ENA]
¢þ
>WENV170573181
FLYJ01002835
[FLYJ] hot springs metagenome; Sediment
3556
3481
-
Trp
CCA
[ENA]
¢þ
>WENV170573127
FLYJ01000149
[FLYJ] hot springs metagenome; Sediment
4462
4387
-
Trp
CCA
[ENA]
¢þ
>WENV170573193
FLYJ01003472
[FLYJ] hot springs metagenome; Sediment
4832
4757
-
Asn
GTT
[ENA]
¢þ
>WENV170573211
FLYJ01005010
[FLYJ] hot springs metagenome; Sediment
4963
4887
-
Gln
TTG
[ENA]
¢þ
>WENV170573140
FLYJ01000530
[FLYJ] hot springs metagenome; Sediment
5220
5131
-
Ser
TGA
[ENA]
¢þ
>WENV170573136
FLYJ01000372
[FLYJ] hot springs metagenome; Sediment
5554
5640
+
Leu
TAG
[ENA]
¢þ
>WENV170573141
FLYJ01000577
[FLYJ] hot springs metagenome; Sediment
5612
5687
+
Asn
GTT
[ENA]
¢þ
>WENV170573105
FLYJ01000029
[FLYJ] hot springs metagenome; Sediment
5715
5789
+
Val
CAC
[ENA]
¢þ
>WENV170573125
FLYJ01000117
[FLYJ] hot springs metagenome; Sediment
6116
6191
+
Lys
TTT
[ENA]
¢þ
>WENV170573116
FLYJ01000064
[FLYJ] hot springs metagenome; Sediment
7584
7659
+
Phe
GAA
[ENA]
¢þ
>WENV170573194
FLYJ01003502
[FLYJ] hot springs metagenome; Sediment
8888
8961
+
Gly
CCC
[ENA]
¢þ
>WENV170573104
FLYJ01000028
[FLYJ] hot springs metagenome; Sediment
10220
10136
-
Leu
CAA
[ENA]
¢þ
>WENV170573118
FLYJ01000087
[FLYJ] hot springs metagenome; Sediment
11370
11277
-
Ser
GCT
[ENA]
¢þ
>WENV170573176
FLYJ01002611
[FLYJ] hot springs metagenome; Sediment
12065
12141
+
Arg
ACG
[ENA]
¢þ
>WENV170573106
FLYJ01000037
[FLYJ] hot springs metagenome; Sediment
12266
12341
+
His
GTG
[ENA]
¢þ
>WENV170573187
FLYJ01003250
[FLYJ] hot springs metagenome; Sediment
12987
12911
-
Val
GAC
[ENA]
¢þ
>WENV170573154
FLYJ01001367
[FLYJ] hot springs metagenome; Sediment
13938
13862
-
Asp
GTC
[ENA]
¢þ
>WENV170573206
FLYJ01004571
[FLYJ] hot springs metagenome; Sediment
17820
17895
+
Lys
TTT
[ENA]
¢þ
>WENV170573112
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
18019
17946
-
Cys
GCA
[ENA]
¢þ
>WENV170573111
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
18188
18113
-
Gly
GCC
[ENA]
¢þ
>WENV170573110
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
18317
18242
-
Gly
GCC
[ENA]
¢þ
>WENV170573114
FLYJ01000050
[FLYJ] hot springs metagenome; Sediment
18805
18729
-
Gln
TTG
[ENA]
¢þ
>WENV170573102
FLYJ01000020
[FLYJ] hot springs metagenome; Sediment
20667
20742
+
Ala
CGC
[ENA]
¢þ
>WENV170573124
FLYJ01000100
[FLYJ] hot springs metagenome; Sediment
25404
25318
-
Leu
TAG
[ENA]
¢þ
>WENV170573113
FLYJ01000040
[FLYJ] hot springs metagenome; Sediment
33758
33674
-
Leu
GAG
[ENA]
¢þ
>WENV170573097
FLYJ01000011
[FLYJ] hot springs metagenome; Sediment
40152
40228
+
Pro
GGG
[ENA]
¢þ
>WENV170573100
FLYJ01000011
[FLYJ] hot springs metagenome; Sediment
48581
48505
-
Val
GAC
[ENA]
¢þ
>WENV170573117
FLYJ01000087
[FLYJ] hot springs metagenome; Sediment
64635
64710
+
Asn
GTT
[ENA]
¢þ
>WENV170573098
FLYJ01000011
[FLYJ] hot springs metagenome; Sediment
69390
69466
+
Arg
TCT
[ENA]
¢þ
>WENV170573101
FLYJ01000017
[FLYJ] hot springs metagenome; Sediment
71714
71641
-
Gly
CCC
[ENA]
¢þ
>WENV170573123
FLYJ01000097
[FLYJ] hot springs metagenome; Sediment
99202
99113
-
Ser
TGA
[ENA]
¢þ
>WENV170573122
FLYJ01000097
[FLYJ] hot springs metagenome; Sediment
109055
108979
-
Arg
ACG
[ENA]
¢þ
>WENV170573103
FLYJ01000028
[FLYJ] hot springs metagenome; Sediment
114454
114543
+
Ser
CGA
[ENA]
¢þ
>WENV170573121
FLYJ01000097
[FLYJ] hot springs metagenome; Sediment
125778
125703
-
Thr
CGT
[ENA]
¢þ
>WENV170573099
FLYJ01000011
[FLYJ] hot springs metagenome; Sediment
131272
131348
+
Pro
TGG
[ENA]
¢þ
>WENV170573109
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
136530
136604
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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