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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FPKX] hydrothermal vent metagenome; water
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170576154
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
531
444
-
Ser
TGA
[ENA]
¢þ
>WENV170576153
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
660
585
-
Cys
GCA
[ENA]
¢þ
>WENV170576152
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
821
735
-
Leu
TAA
[ENA]
¢þ
>WENV170576151
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
915
841
-
Gly
GCC
[ENA]
¢þ
>WENV170576127
FPKX01000004
[FPKX] hydrothermal vent metagenome; water
980
896
-
Leu
TAG
[ENA]
¢þ
>WENV170576126
FPKX01000004
[FPKX] hydrothermal vent metagenome; water
1090
1014
-
Arg
TCT
[ENA]
¢þ
>WENV170576125
FPKX01000004
[FPKX] hydrothermal vent metagenome; water
1206
1130
-
Arg
TCG
[ENA]
¢þ
>WENV170576124
FPKX01000004
[FPKX] hydrothermal vent metagenome; water
1330
1255
-
His
GTG
[ENA]
¢þ
>WENV170576123
FPKX01000004
[FPKX] hydrothermal vent metagenome; water
1448
1372
-
Pro
TGG
[ENA]
¢þ
>WENV170576145
FPKX01000048
[FPKX] hydrothermal vent metagenome; water
1695
1621
-
Thr
GGT
[ENA]
¢þ
>WENV170576141
FPKX01000044
[FPKX] hydrothermal vent metagenome; water
1845
1769
-
Met
CAT
[ENA]
¢þ
>WENV170576144
FPKX01000048
[FPKX] hydrothermal vent metagenome; water
1920
1845
-
Gly
TCC
[ENA]
¢þ
>WENV170576143
FPKX01000048
[FPKX] hydrothermal vent metagenome; water
2029
1945
-
Tyr
GTA
[ENA]
¢þ
>WENV170576142
FPKX01000048
[FPKX] hydrothermal vent metagenome; water
2156
2080
-
Thr
TGT
[ENA]
¢þ
>WENV170576140
FPKX01000044
[FPKX] hydrothermal vent metagenome; water
20730
20655
-
Gly
TCC
[ENA]
¢þ
>WENV170576139
FPKX01000044
[FPKX] hydrothermal vent metagenome; water
20834
20750
-
Leu
CAA
[ENA]
¢þ
>WENV170576128
FPKX01000005
[FPKX] hydrothermal vent metagenome; water
22478
22568
+
Ser
GCT
[ENA]
¢þ
>WENV170576150
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
25868
25793
-
Val
GAC
[ENA]
¢þ
>WENV170576129
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
26747
26822
+
Phe
GAA
[ENA]
¢þ
>WENV170576149
FPKX01000059
[FPKX] hydrothermal vent metagenome; water
44495
44419
-
Met
CAT
[ENA]
¢þ
>WENV170576148
FPKX01000059
[FPKX] hydrothermal vent metagenome; water
44619
44543
-
Met
CAT
[ENA]
¢þ
>WENV170576147
FPKX01000059
[FPKX] hydrothermal vent metagenome; water
44742
44668
-
Gln
TTG
[ENA]
¢þ
>WENV170576146
FPKX01000057
[FPKX] hydrothermal vent metagenome; water
45578
45503
-
Trp
CCA
[ENA]
¢þ
>WENV170576132
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
45641
45565
-
Arg
GCG
[ENA]
¢þ
>WENV170576133
FPKX01000008
[FPKX] hydrothermal vent metagenome; water
61553
61469
-
Leu
GAG
[ENA]
¢þ
>WENV170576134
FPKX01000032
[FPKX] hydrothermal vent metagenome; water
71476
71551
+
Lys
TTT
[ENA]
¢þ
>WENV170576135
FPKX01000032
[FPKX] hydrothermal vent metagenome; water
71559
71634
+
Val
TAC
[ENA]
¢þ
>WENV170576136
FPKX01000032
[FPKX] hydrothermal vent metagenome; water
71650
71726
+
Asp
GTC
[ENA]
¢þ
>WENV170576137
FPKX01000032
[FPKX] hydrothermal vent metagenome; water
71739
71814
+
Lys
TTT
[ENA]
¢þ
>WENV170576138
FPKX01000032
[FPKX] hydrothermal vent metagenome; water
71846
71921
+
Glu
TTC
[ENA]
¢þ
>WENV170576130
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
79339
79413
+
Glu
TTC
[ENA]
¢þ
>WENV170576131
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
79445
79519
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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