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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FPLS] metagenome; unknown
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170576167
FPLS01059454
[FPLS] metagenome; unknown
82
6
-
Ile
GAT
[ENA]
¢þ
>WENV170576162
FPLS01007811
[FPLS] metagenome; unknown
155
79
-
Ala
TGC
[ENA]
¢þ
>WENV170576161
FPLS01007811
[FPLS] metagenome; unknown
271
195
-
Ile
GAT
[ENA]
¢þ
>WENV170576160
FPLS01005716
[FPLS] metagenome; unknown
518
442
-
Ile
GAT
[ENA]
¢þ
>WENV170576159
FPLS01005716
[FPLS] metagenome; unknown
636
561
-
Ala
TGC
[ENA]
¢þ
>WENV170576170
FPLS01061090
[FPLS] metagenome; unknown
1033
959
-
Gln
TTG
[ENA]
¢þ
>WENV170576163
FPLS01008703
[FPLS] metagenome; unknown
1080
1155
+
Trp
CCA
[ENA]
¢þ
>WENV170576169
FPLS01060715
[FPLS] metagenome; unknown
1216
1140
-
Ile
GAT
[ENA]
¢þ
>WENV170576168
FPLS01060715
[FPLS] metagenome; unknown
1308
1233
-
Ala
TGC
[ENA]
¢þ
>WENV170576166
FPLS01034800
[FPLS] metagenome; unknown
1331
1407
+
Ile
GAT
[ENA]
¢þ
>WENV170576165
FPLS01023478
[FPLS] metagenome; unknown
1376
1300
-
Met
CAT
[ENA]
¢þ
>WENV170576164
FPLS01009305
[FPLS] metagenome; unknown
1464
1388
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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