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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FRYL] hydrothermal vent metagenome; water
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170577422
FRYL01000002
[FRYL] hydrothermal vent metagenome; water
3304
3228
-
Asp
GTC
[ENA]
¢þ
>WENV170577421
FRYL01000002
[FRYL] hydrothermal vent metagenome; water
3395
3320
-
Val
TAC
[ENA]
¢þ
>WENV170577420
FRYL01000002
[FRYL] hydrothermal vent metagenome; water
3492
3417
-
Lys
TTT
[ENA]
¢þ
>WENV170577435
FRYL01000025
[FRYL] hydrothermal vent metagenome; water
4440
4366
-
Glu
TTC
[ENA]
¢þ
>WENV170577430
FRYL01000017
[FRYL] hydrothermal vent metagenome; water
5302
5376
+
Val
GAC
[ENA]
¢þ
>WENV170577442
FRYL01000032
[FRYL] hydrothermal vent metagenome; water
7245
7329
+
Leu
CAA
[ENA]
¢þ
>WENV170577436
FRYL01000028
[FRYL] hydrothermal vent metagenome; water
7865
7939
+
Gln
TTG
[ENA]
¢þ
>WENV170577437
FRYL01000028
[FRYL] hydrothermal vent metagenome; water
7951
8027
+
Met
CAT
[ENA]
¢þ
>WENV170577423
FRYL01000004
[FRYL] hydrothermal vent metagenome; water
8100
8174
+
Asn
GTT
[ENA]
¢þ
>WENV170577431
FRYL01000019
[FRYL] hydrothermal vent metagenome; water
10848
10924
+
Met
CAT
[ENA]
¢þ
>WENV170577438
FRYL01000030
[FRYL] hydrothermal vent metagenome; water
18473
18547
+
Gly
GCC
[ENA]
¢þ
>WENV170577439
FRYL01000030
[FRYL] hydrothermal vent metagenome; water
18582
18669
+
Leu
TAA
[ENA]
¢þ
>WENV170577440
FRYL01000030
[FRYL] hydrothermal vent metagenome; water
18723
18796
+
Cys
GCA
[ENA]
¢þ
>WENV170577441
FRYL01000030
[FRYL] hydrothermal vent metagenome; water
18813
18900
+
Ser
TGA
[ENA]
¢þ
>WENV170577425
FRYL01000016
[FRYL] hydrothermal vent metagenome; water
19586
19662
+
Pro
TGG
[ENA]
¢þ
>WENV170577426
FRYL01000016
[FRYL] hydrothermal vent metagenome; water
19704
19779
+
His
GTG
[ENA]
¢þ
>WENV170577427
FRYL01000016
[FRYL] hydrothermal vent metagenome; water
19800
19876
+
Arg
TCG
[ENA]
¢þ
>WENV170577428
FRYL01000016
[FRYL] hydrothermal vent metagenome; water
19898
19974
+
Arg
TCT
[ENA]
¢þ
>WENV170577429
FRYL01000016
[FRYL] hydrothermal vent metagenome; water
20019
20103
+
Leu
TAG
[ENA]
¢þ
>WENV170577424
FRYL01000014
[FRYL] hydrothermal vent metagenome; water
25132
25057
-
Phe
GAA
[ENA]
¢þ
>WENV170577443
FRYL01000038
[FRYL] hydrothermal vent metagenome; water
38051
38127
+
Arg
GCG
[ENA]
¢þ
>WENV170577434
FRYL01000025
[FRYL] hydrothermal vent metagenome; water
43884
43795
-
Ser
GCT
[ENA]
¢þ
>WENV170577415
FRYL01000001
[FRYL] hydrothermal vent metagenome; water
45983
46059
+
Thr
TGT
[ENA]
¢þ
>WENV170577416
FRYL01000001
[FRYL] hydrothermal vent metagenome; water
46110
46194
+
Tyr
GTA
[ENA]
¢þ
>WENV170577417
FRYL01000001
[FRYL] hydrothermal vent metagenome; water
46201
46276
+
Gly
TCC
[ENA]
¢þ
>WENV170577418
FRYL01000001
[FRYL] hydrothermal vent metagenome; water
46407
46481
+
Thr
GGT
[ENA]
¢þ
>WENV170577419
FRYL01000001
[FRYL] hydrothermal vent metagenome; water
48056
48131
+
Trp
CCA
[ENA]
¢þ
>WENV170577444
FRYL01000038
[FRYL] hydrothermal vent metagenome; water
127520
127596
+
Met
CAT
[ENA]
¢þ
>WENV170577432
FRYL01000021
[FRYL] hydrothermal vent metagenome; water
151427
151512
+
Ser
GGA
[ENA]
¢þ
>WENV170577433
FRYL01000021
[FRYL] hydrothermal vent metagenome; water
161625
161709
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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