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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSSO] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015670
FSSO01000022
[FSSO] metagenome; soil
42
126
+
Tyr
GTA
[ENA]
¢þ
>WENV180015671
FSSO01000022
[FSSO] metagenome; soil
156
229
+
Gly
TCC
[ENA]
¢þ
>WENV180015677
FSSO01000094
[FSSO] metagenome; soil
1065
992
-
Gly
CCC
[ENA]
¢þ
>WENV180015673
FSSO01000041
[FSSO] metagenome; soil
1562
1637
+
Asn
GTT
[ENA]
¢þ
>WENV180015674
FSSO01000044
[FSSO] metagenome; soil
2416
2340
-
Met
CAT
[ENA]
¢þ
>WENV180015676
FSSO01000056
[FSSO] metagenome; soil
2460
2549
+
Ser
CGA
[ENA]
¢þ
>WENV180015675
FSSO01000051
[FSSO] metagenome; soil
3439
3513
+
Thr
GGT
[ENA]
¢þ
>WENV180015672
FSSO01000029
[FSSO] metagenome; soil
4067
3992
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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