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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTA] metagenome; soil
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015707
FSTA01000035
[FSTA] metagenome; soil
10
94
+
Leu
CAA
[ENA]
¢þ
>WENV180015711
FSTA01000288
[FSTA] metagenome; soil
166
247
+
Leu
CAG
[ENA]
¢þ
>WENV180015708
FSTA01000035
[FSTA] metagenome; soil
369
285
-
Leu
CAA
[ENA]
¢þ
>WENV180015710
FSTA01000208
[FSTA] metagenome; soil
568
642
+
Asp
GTC
[ENA]
¢þ
>WENV180015709
FSTA01000162
[FSTA] metagenome; soil
1244
1335
+
Ser
GCT
[ENA]
¢þ
>WENV180015712
FSTA01000307
[FSTA] metagenome; soil
2910
2991
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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