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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTB] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015713
FSTB01000029
[FSTB] metagenome; soil
122
46
-
Pro
GGG
[ENA]
¢þ
>WENV180015715
FSTB01000051
[FSTB] metagenome; soil
220
145
-
Val
TAC
[ENA]
¢þ
>WENV180015722
FSTB01000245
[FSTB] metagenome; soil
543
632
+
Ser
CGA
[ENA]
¢þ
>WENV180015720
FSTB01000168
[FSTB] metagenome; soil
1362
1287
-
Thr
CGT
[ENA]
¢þ
>WENV180015719
FSTB01000118
[FSTB] metagenome; soil
2125
2051
-
Glu
CTC
[ENA]
¢þ
>WENV180015723
FSTB01000250
[FSTB] metagenome; soil
2364
2454
+
Ser
GCT
[ENA]
¢þ
>WENV180015716
FSTB01000061
[FSTB] metagenome; soil
2627
2709
+
Leu
CAG
[ENA]
¢þ
>WENV180015717
FSTB01000088
[FSTB] metagenome; soil
2636
2711
+
Asn
GTT
[ENA]
¢þ
>WENV180015714
FSTB01000050
[FSTB] metagenome; soil
3230
3155
-
Trp
CCA
[ENA]
¢þ
>WENV180015718
FSTB01000088
[FSTB] metagenome; soil
3468
3395
-
Cys
GCA
[ENA]
¢þ
>WENV180015721
FSTB01000193
[FSTB] metagenome; soil
7022
7095
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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