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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTC] metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015732
FSTC01000308
[FSTC] metagenome; soil
84
8
-
Val
GAC
[ENA]
¢þ
>WENV180015728
FSTC01000220
[FSTC] metagenome; soil
1006
931
-
Pro
TGG
[ENA]
¢þ
>WENV180015734
FSTC01000325
[FSTC] metagenome; soil
2147
2222
+
Thr
TGT
[ENA]
¢þ
>WENV180015735
FSTC01000325
[FSTC] metagenome; soil
2247
2332
+
Tyr
GTA
[ENA]
¢þ
>WENV180015733
FSTC01000311
[FSTC] metagenome; soil
2271
2196
-
Lys
TTT
[ENA]
¢þ
>WENV180015736
FSTC01000325
[FSTC] metagenome; soil
2391
2467
+
Gly
TCC
[ENA]
¢þ
>WENV180015737
FSTC01000325
[FSTC] metagenome; soil
2507
2581
+
Thr
GGT
[ENA]
¢þ
>WENV180015727
FSTC01000112
[FSTC] metagenome; soil
3473
3549
+
Arg
CCG
[ENA]
¢þ
>WENV180015731
FSTC01000278
[FSTC] metagenome; soil
3821
3904
+
Leu
TAG
[ENA]
¢þ
>WENV180015724
FSTC01000031
[FSTC] metagenome; soil
3830
3754
-
Asp
GTC
[ENA]
¢þ
>WENV180015738
FSTC01000325
[FSTC] metagenome; soil
3944
4019
+
Trp
CCA
[ENA]
¢þ
>WENV180015726
FSTC01000106
[FSTC] metagenome; soil
6071
6155
+
Leu
CAG
[ENA]
¢þ
>WENV180015725
FSTC01000042
[FSTC] metagenome; soil
7331
7245
-
Leu
CAA
[ENA]
¢þ
>WENV180015729
FSTC01000257
[FSTC] metagenome; soil
14431
14355
-
Met
CAT
[ENA]
¢þ
>WENV180015730
FSTC01000259
[FSTC] metagenome; soil
16055
16130
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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