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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTD] metagenome; soil
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015759
FSTD01000445
[FSTD] metagenome; soil
60
144
+
Leu
CAA
[ENA]
¢þ
>WENV180015756
FSTD01000409
[FSTD] metagenome; soil
192
116
-
Met
CAT
[ENA]
¢þ
>WENV180015740
FSTD01000043
[FSTD] metagenome; soil
261
352
+
Ser
GCT
[ENA]
¢þ
>WENV180015746
FSTD01000097
[FSTD] metagenome; soil
655
579
-
Arg
TCT
[ENA]
¢þ
>WENV180015758
FSTD01000426
[FSTD] metagenome; soil
845
770
-
His
GTG
[ENA]
¢þ
>WENV180015745
FSTD01000097
[FSTD] metagenome; soil
1372
1296
-
Pro
CGG
[ENA]
¢þ
>WENV180015744
FSTD01000097
[FSTD] metagenome; soil
1475
1399
-
Pro
TGG
[ENA]
¢þ
>WENV180015750
FSTD01000147
[FSTD] metagenome; soil
2224
2140
-
Leu
GAG
[ENA]
¢þ
>WENV180015751
FSTD01000170
[FSTD] metagenome; soil
2226
2302
+
Lys
TTT
[ENA]
¢þ
>WENV180015757
FSTD01000413
[FSTD] metagenome; soil
2239
2165
-
Val
GAC
[ENA]
¢þ
>WENV180015749
FSTD01000114
[FSTD] metagenome; soil
2729
2656
-
Gly
CCC
[ENA]
¢þ
>WENV180015763
FSTD01000522
[FSTD] metagenome; soil
3026
3101
+
Ala
GGC
[ENA]
¢þ
>WENV180015743
FSTD01000097
[FSTD] metagenome; soil
3193
3119
-
Glu
TTC
[ENA]
¢þ
>WENV180015752
FSTD01000180
[FSTD] metagenome; soil
3355
3280
-
Phe
GAA
[ENA]
¢þ
>WENV180015742
FSTD01000093
[FSTD] metagenome; soil
3564
3489
-
Trp
CCA
[ENA]
¢þ
>WENV180015748
FSTD01000104
[FSTD] metagenome; soil
3868
3793
-
Asn
GTT
[ENA]
¢þ
>WENV180015755
FSTD01000397
[FSTD] metagenome; soil
3903
3992
+
Ser
TGA
[ENA]
¢þ
>WENV180015747
FSTD01000104
[FSTD] metagenome; soil
4547
4474
-
Cys
GCA
[ENA]
¢þ
>WENV180015739
FSTD01000007
[FSTD] metagenome; soil
5913
5824
-
Ser
GGA
[ENA]
¢þ
>WENV180015761
FSTD01000472
[FSTD] metagenome; soil
7696
7772
+
Asp
GTC
[ENA]
¢þ
>WENV180015741
FSTD01000053
[FSTD] metagenome; soil
9029
8954
-
Ile2
CAT
[ENA]
¢þ
>WENV180015760
FSTD01000449
[FSTD] metagenome; soil
10807
10891
+
Leu
TAG
[ENA]
¢þ
>WENV180015753
FSTD01000203
[FSTD] metagenome; soil
12060
11985
-
Thr
CGT
[ENA]
¢þ
>WENV180015762
FSTD01000472
[FSTD] metagenome; soil
12621
12546
-
Val
TAC
[ENA]
¢þ
>WENV180015754
FSTD01000234
[FSTD] metagenome; soil
19996
20070
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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