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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSTE] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015768
FSTE01000119
[FSTE] metagenome; soil
53
137
+
Leu
CAA
[ENA]
¢þ
>WENV180015765
FSTE01000072
[FSTE] metagenome; soil
86
171
+
Tyr
GTA
[ENA]
¢þ
>WENV180015770
FSTE01000155
[FSTE] metagenome; soil
476
401
-
Thr
GGT
[ENA]
¢þ
>WENV180015769
FSTE01000119
[FSTE] metagenome; soil
624
700
+
Pro
GGG
[ENA]
¢þ
>WENV180015786
FSTE01000377
[FSTE] metagenome; soil
854
769
-
Leu
TAA
[ENA]
¢þ
>WENV180015783
FSTE01000355
[FSTE] metagenome; soil
860
935
+
Trp
CCA
[ENA]
¢þ
>WENV180015766
FSTE01000101
[FSTE] metagenome; soil
1015
1091
+
Val
TAC
[ENA]
¢þ
>WENV180015780
FSTE01000330
[FSTE] metagenome; soil
1521
1447
-
Thr
CGT
[ENA]
¢þ
>WENV180015774
FSTE01000239
[FSTE] metagenome; soil
1928
2004
+
Arg
TCT
[ENA]
¢þ
>WENV180015772
FSTE01000167
[FSTE] metagenome; soil
2137
2224
+
Ser
CGA
[ENA]
¢þ
>WENV180015764
FSTE01000012
[FSTE] metagenome; soil
2699
2624
-
Gly
GCC
[ENA]
¢þ
>WENV180015771
FSTE01000166
[FSTE] metagenome; soil
3163
3089
-
Gly
CCC
[ENA]
¢þ
>WENV180015781
FSTE01000331
[FSTE] metagenome; soil
3361
3277
-
Leu
CAG
[ENA]
¢þ
>WENV180015767
FSTE01000109
[FSTE] metagenome; soil
3856
3932
+
Val
CAC
[ENA]
¢þ
>WENV180015776
FSTE01000281
[FSTE] metagenome; soil
4094
4021
-
Gln
TTG
[ENA]
¢þ
>WENV180015777
FSTE01000293
[FSTE] metagenome; soil
4561
4485
-
fMet
CAT
[ENA]
¢þ
>WENV180015782
FSTE01000337
[FSTE] metagenome; soil
4652
4578
-
Asn
GTT
[ENA]
¢þ
>WENV180015779
FSTE01000308
[FSTE] metagenome; soil
4925
5001
+
Pro
TGG
[ENA]
¢þ
>WENV180015778
FSTE01000307
[FSTE] metagenome; soil
6168
6242
+
Arg
CCG
[ENA]
¢þ
>WENV180015775
FSTE01000240
[FSTE] metagenome; soil
7198
7114
-
Leu
GAG
[ENA]
¢þ
>WENV180015773
FSTE01000197
[FSTE] metagenome; soil
10861
10770
-
Ser
GCT
[ENA]
¢þ
>WENV180015784
FSTE01000356
[FSTE] metagenome; soil
11151
11075
-
Arg
ACG
[ENA]
¢þ
>WENV180015785
FSTE01000366
[FSTE] metagenome; soil
11962
11889
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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