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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTI] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015799
FSTI01000069
[FSTI] metagenome; soil
99
17
-
Leu
GAG
[ENA]
¢þ
>WENV180015796
FSTI01000008
[FSTI] metagenome; soil
118
33
-
Ser
TGA
[ENA]
¢þ
>WENV180015805
FSTI01000320
[FSTI] metagenome; soil
483
394
-
Ser
CGA
[ENA]
¢þ
>WENV180015798
FSTI01000039
[FSTI] metagenome; soil
911
839
-
Sup
CTA
[ENA]
¢þ
>WENV180015800
FSTI01000074
[FSTI] metagenome; soil
1640
1713
+
Arg
TCT
[ENA]
¢þ
>WENV180015803
FSTI01000252
[FSTI] metagenome; soil
1755
1827
+
Lys
TTT
[ENA]
¢þ
>WENV180015802
FSTI01000118
[FSTI] metagenome; soil
2454
2381
-
Ala
GGC
[ENA]
¢þ
>WENV180015801
FSTI01000118
[FSTI] metagenome; soil
2601
2528
-
Ala
CGC
[ENA]
¢þ
>WENV180015806
FSTI01000346
[FSTI] metagenome; soil
2853
2779
-
Val
TAC
[ENA]
¢þ
>WENV180015797
FSTI01000038
[FSTI] metagenome; soil
2864
2782
-
Leu
TAG
[ENA]
¢þ
>WENV180015804
FSTI01000270
[FSTI] metagenome; soil
3839
3912
+
Arg
GCG
[ENA]
¢þ
>WENV180015807
FSTI01000363
[FSTI] metagenome; soil
3865
3794
-
Cys
GCA
[ENA]
¢þ
>WENV180015808
FSTI01000375
[FSTI] metagenome; soil
10356
10443
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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