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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSTK] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015819
FSTK01000036
[FSTK] metagenome; soil
20
93
+
Ala
GGC
[ENA]
¢þ
>WENV180015822
FSTK01000139
[FSTK] metagenome; soil
317
406
+
Ser
TGA
[ENA]
¢þ
>WENV180015825
FSTK01000206
[FSTK] metagenome; soil
386
313
-
Pro
GGG
[ENA]
¢þ
>WENV180015824
FSTK01000206
[FSTK] metagenome; soil
891
961
+
Gly
TCC
[ENA]
¢þ
>WENV180015820
FSTK01000048
[FSTK] metagenome; soil
1307
1234
-
Arg
TCT
[ENA]
¢þ
>WENV180015821
FSTK01000075
[FSTK] metagenome; soil
2120
2046
-
Trp
CCA
[ENA]
¢þ
>WENV180015828
FSTK01000244
[FSTK] metagenome; soil
2428
2354
-
Ile2
CAT
[ENA]
¢þ
>WENV180015823
FSTK01000184
[FSTK] metagenome; soil
4234
4316
+
Tyr
GTA
[ENA]
¢þ
>WENV180015827
FSTK01000237
[FSTK] metagenome; soil
4600
4528
-
Ala
CGC
[ENA]
¢þ
>WENV180015826
FSTK01000221
[FSTK] metagenome; soil
4937
4865
-
Gln
CTG
[ENA]
¢þ
>WENV180015818
FSTK01000035
[FSTK] metagenome; soil
5219
5146
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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