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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTL] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015832
FSTL01000081
[FSTL] metagenome; soil
79
4
-
Thr
CGT
[ENA]
¢þ
>WENV180015829
FSTL01000046
[FSTL] metagenome; soil
99
23
-
Met
CAT
[ENA]
¢þ
>WENV180015834
FSTL01000149
[FSTL] metagenome; soil
139
56
-
Leu
GAG
[ENA]
¢þ
>WENV180015830
FSTL01000047
[FSTL] metagenome; soil
179
104
-
Asn
GTT
[ENA]
¢þ
>WENV180015839
FSTL01000186
[FSTL] metagenome; soil
279
202
-
Pro
TGG
[ENA]
¢þ
>WENV180015831
FSTL01000048
[FSTL] metagenome; soil
301
213
-
Leu
TAA
[ENA]
¢þ
>WENV180015836
FSTL01000170
[FSTL] metagenome; soil
2115
2199
+
Leu
TAG
[ENA]
¢þ
>WENV180015840
FSTL01000298
[FSTL] metagenome; soil
2261
2337
+
Arg
CCG
[ENA]
¢þ
>WENV180015837
FSTL01000170
[FSTL] metagenome; soil
2326
2250
-
Arg
TCT
[ENA]
¢þ
>WENV180015838
FSTL01000178
[FSTL] metagenome; soil
2794
2870
+
Gly
GCC
[ENA]
¢þ
>WENV180015833
FSTL01000133
[FSTL] metagenome; soil
2866
2791
-
Lys
TTT
[ENA]
¢þ
>WENV180015835
FSTL01000151
[FSTL] metagenome; soil
4209
4134
-
Ala
TGC
[ENA]
¢þ
>WENV180015841
FSTL01000307
[FSTL] metagenome; soil
5491
5567
+
His
GTG
[ENA]
¢þ
>WENV180015842
FSTL01000360
[FSTL] metagenome; soil
11292
11366
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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