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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSTO] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015877
FSTO01000348
[FSTO] metagenome; soil
8
97
+
Ser
CGA
[ENA]
¢þ
>WENV180015871
FSTO01000237
[FSTO] metagenome; soil
112
188
+
Arg
TCT
[ENA]
¢þ
>WENV180015868
FSTO01000052
[FSTO] metagenome; soil
509
435
-
Gly
CCC
[ENA]
¢þ
>WENV180015867
FSTO01000019
[FSTO] metagenome; soil
675
749
+
Val
TAC
[ENA]
¢þ
>WENV180015875
FSTO01000323
[FSTO] metagenome; soil
676
752
+
Arg
CCT
[ENA]
¢þ
>WENV180015870
FSTO01000190
[FSTO] metagenome; soil
822
747
-
Phe
GAA
[ENA]
¢þ
>WENV180015873
FSTO01000280
[FSTO] metagenome; soil
2858
2942
+
Leu
TAG
[ENA]
¢þ
>WENV180015869
FSTO01000084
[FSTO] metagenome; soil
3771
3682
-
Ser
TGA
[ENA]
¢þ
>WENV180015874
FSTO01000298
[FSTO] metagenome; soil
4858
4944
+
Leu
CAG
[ENA]
¢þ
>WENV180015872
FSTO01000257
[FSTO] metagenome; soil
9638
9562
-
Arg
ACG
[ENA]
¢þ
>WENV180015876
FSTO01000346
[FSTO] metagenome; soil
30734
30658
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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