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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSTQ] metagenome; soil
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015885
FSTQ01000016
[FSTQ] metagenome; soil
139
63
-
Arg
CCG
[ENA]
¢þ
>WENV180015910
FSTQ01000392
[FSTQ] metagenome; soil
183
108
-
Pro
TGG
[ENA]
¢þ
>WENV180015907
FSTQ01000349
[FSTQ] metagenome; soil
345
262
-
Leu
TAA
[ENA]
¢þ
>WENV180015928
FSTQ01000409
[FSTQ] metagenome; soil
875
802
-
Gln
TTG
[ENA]
¢þ
>WENV180015889
FSTQ01000077
[FSTQ] metagenome; soil
914
842
-
Gln
TTG
[ENA]
¢þ
>WENV180015904
FSTQ01000231
[FSTQ] metagenome; soil
1539
1464
-
Asn
GTT
[ENA]
¢þ
>WENV180015908
FSTQ01000355
[FSTQ] metagenome; soil
2055
2129
+
Pro
CGG
[ENA]
¢þ
>WENV180015887
FSTQ01000044
[FSTQ] metagenome; soil
2135
2206
+
Gln
CTG
[ENA]
¢þ
>WENV180015927
FSTQ01000409
[FSTQ] metagenome; soil
2145
2070
-
Leu
CAA
[ENA]
¢þ
>WENV180015888
FSTQ01000044
[FSTQ] metagenome; soil
2240
2314
+
Glu
CTC
[ENA]
¢þ
>WENV180015926
FSTQ01000409
[FSTQ] metagenome; soil
2244
2162
-
Leu
GAG
[ENA]
¢þ
>WENV180015894
FSTQ01000113
[FSTQ] metagenome; soil
2249
2323
+
Arg
ACG
[ENA]
¢þ
>WENV180015925
FSTQ01000409
[FSTQ] metagenome; soil
2323
2246
-
Leu
TAG
[ENA]
¢þ
>WENV180015884
FSTQ01000015
[FSTQ] metagenome; soil
2814
2729
-
Leu
TAG
[ENA]
¢þ
>WENV180015905
FSTQ01000241
[FSTQ] metagenome; soil
2975
2899
-
fMet
CAT
[ENA]
¢þ
>WENV180015924
FSTQ01000409
[FSTQ] metagenome; soil
3377
3301
-
Glu
CTC
[ENA]
¢þ
>WENV180015923
FSTQ01000409
[FSTQ] metagenome; soil
3569
3498
-
Gly
GCC
[ENA]
¢þ
>WENV180015922
FSTQ01000409
[FSTQ] metagenome; soil
3655
3583
-
Gly
TCC
[ENA]
¢þ
>WENV180015921
FSTQ01000409
[FSTQ] metagenome; soil
3850
3778
-
Ala
TGC
[ENA]
¢þ
>WENV180015920
FSTQ01000409
[FSTQ] metagenome; soil
3943
3871
-
Ala
CGC
[ENA]
¢þ
>WENV180015893
FSTQ01000095
[FSTQ] metagenome; soil
4002
4073
+
Val
GAC
[ENA]
¢þ
>WENV180015919
FSTQ01000409
[FSTQ] metagenome; soil
4130
4057
-
Asp
GTC
[ENA]
¢þ
>WENV180015918
FSTQ01000409
[FSTQ] metagenome; soil
4253
4180
-
Ala
GGC
[ENA]
¢þ
>WENV180015917
FSTQ01000409
[FSTQ] metagenome; soil
4756
4684
-
Arg
TCT
[ENA]
¢þ
>WENV180015892
FSTQ01000090
[FSTQ] metagenome; soil
4855
4768
-
Ser
TGA
[ENA]
¢þ
>WENV180015906
FSTQ01000339
[FSTQ] metagenome; soil
4910
4823
-
Ser
GCT
[ENA]
¢þ
>WENV180015930
FSTQ01000451
[FSTQ] metagenome; soil
5168
5243
+
Pro
GGG
[ENA]
¢þ
>WENV180015932
FSTQ01000605
[FSTQ] metagenome; soil
5733
5659
-
Trp
CCA
[ENA]
¢þ
>WENV180015898
FSTQ01000144
[FSTQ] metagenome; soil
6110
6036
-
Ile2
CAT
[ENA]
¢þ
>WENV180015916
FSTQ01000409
[FSTQ] metagenome; soil
6667
6593
-
His
GTG
[ENA]
¢þ
>WENV180015915
FSTQ01000409
[FSTQ] metagenome; soil
6996
6922
-
Asn
GTT
[ENA]
¢þ
>WENV180015914
FSTQ01000409
[FSTQ] metagenome; soil
7152
7078
-
Gln
CTG
[ENA]
¢þ
>WENV180015913
FSTQ01000409
[FSTQ] metagenome; soil
7241
7169
-
Lys
TTT
[ENA]
¢þ
>WENV180015912
FSTQ01000409
[FSTQ] metagenome; soil
7324
7251
-
Lys
CTT
[ENA]
¢þ
>WENV180015911
FSTQ01000409
[FSTQ] metagenome; soil
7472
7390
-
Tyr
GTA
[ENA]
¢þ
>WENV180015896
FSTQ01000133
[FSTQ] metagenome; soil
7948
8023
+
Phe
GAA
[ENA]
¢þ
>WENV180015900
FSTQ01000204
[FSTQ] metagenome; soil
9009
8935
-
Gly
GCC
[ENA]
¢þ
>WENV180015899
FSTQ01000165
[FSTQ] metagenome; soil
9500
9583
+
Leu
CAG
[ENA]
¢þ
>WENV180015909
FSTQ01000382
[FSTQ] metagenome; soil
10033
9960
-
His
GTG
[ENA]
¢þ
>WENV180015886
FSTQ01000022
[FSTQ] metagenome; soil
10476
10402
-
Cys
GCA
[ENA]
¢þ
>WENV180015897
FSTQ01000138
[FSTQ] metagenome; soil
11955
11872
-
Leu
CAA
[ENA]
¢þ
>WENV180015891
FSTQ01000080
[FSTQ] metagenome; soil
12906
12832
-
Lys
CTT
[ENA]
¢þ
>WENV180015890
FSTQ01000080
[FSTQ] metagenome; soil
13043
12968
-
Arg
TCG
[ENA]
¢þ
>WENV180015931
FSTQ01000454
[FSTQ] metagenome; soil
19598
19671
+
Ala
GGC
[ENA]
¢þ
>WENV180015929
FSTQ01000428
[FSTQ] metagenome; soil
23236
23310
+
Gly
CCC
[ENA]
¢þ
>WENV180015901
FSTQ01000225
[FSTQ] metagenome; soil
29570
29659
+
Ser
CGA
[ENA]
¢þ
>WENV180015902
FSTQ01000225
[FSTQ] metagenome; soil
29765
29852
+
Ser
GGA
[ENA]
¢þ
>WENV180015895
FSTQ01000116
[FSTQ] metagenome; soil
30816
30912
+
SeC
TCA
[ENA]
¢þ
>WENV180015903
FSTQ01000229
[FSTQ] metagenome; soil
57771
57845
+
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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