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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTR] metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015945
FSTR01000511
[FSTR] metagenome; soil
159
233
+
Glu
TTC
[ENA]
¢þ
>WENV180015946
FSTR01000511
[FSTR] metagenome; soil
468
553
+
Cys
GCA
[ENA]
¢þ
>WENV180015947
FSTR01000511
[FSTR] metagenome; soil
575
650
+
His
GTG
[ENA]
¢þ
>WENV180015944
FSTR01000459
[FSTR] metagenome; soil
1103
1178
+
Asn
GTT
[ENA]
¢þ
>WENV180015941
FSTR01000288
[FSTR] metagenome; soil
1526
1601
+
Lys
TTT
[ENA]
¢þ
>WENV180015935
FSTR01000050
[FSTR] metagenome; soil
1598
1522
-
Ile2
CAT
[ENA]
¢þ
>WENV180015937
FSTR01000154
[FSTR] metagenome; soil
1625
1554
-
Gly
CCC
[ENA]
¢þ
>WENV180015942
FSTR01000288
[FSTR] metagenome; soil
1743
1818
+
Lys
CTT
[ENA]
¢þ
>WENV180015943
FSTR01000292
[FSTR] metagenome; soil
2747
2672
-
Thr
TGT
[ENA]
¢þ
>WENV180015934
FSTR01000048
[FSTR] metagenome; soil
3091
3015
-
Ile2
CAT
[ENA]
¢þ
>WENV180015933
FSTR01000009
[FSTR] metagenome; soil
3557
3470
-
Ser
CGA
[ENA]
¢þ
>WENV180015939
FSTR01000206
[FSTR] metagenome; soil
4034
3958
-
Pro
GGG
[ENA]
¢þ
>WENV180015940
FSTR01000229
[FSTR] metagenome; soil
4679
4585
-
SeC
TCA
[ENA]
¢þ
>WENV180015938
FSTR01000179
[FSTR] metagenome; soil
4746
4822
+
Arg
ACG
[ENA]
¢þ
>WENV180015936
FSTR01000102
[FSTR] metagenome; soil
4794
4718
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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