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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTT] metagenome; soil
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015975
FSTT01000179
[FSTT] metagenome; soil
1
78
+
Pro
CGG
[ENA]
¢þ
>WENV180015980
FSTT01000391
[FSTT] metagenome; soil
14
90
+
Met
CAT
[ENA]
¢þ
>WENV180015981
FSTT01000422
[FSTT] metagenome; soil
99
22
-
Pro
CGG
[ENA]
¢þ
>WENV180015986
FSTT01000492
[FSTT] metagenome; soil
288
215
-
Gly
CCC
[ENA]
¢þ
>WENV180015974
FSTT01000154
[FSTT] metagenome; soil
413
337
-
Arg
ACG
[ENA]
¢þ
>WENV180015985
FSTT01000489
[FSTT] metagenome; soil
635
561
-
Thr
CGT
[ENA]
¢þ
>WENV180015973
FSTT01000108
[FSTT] metagenome; soil
681
606
-
Lys
TTT
[ENA]
¢þ
>WENV180015978
FSTT01000331
[FSTT] metagenome; soil
693
618
-
Ala
CGC
[ENA]
¢þ
>WENV180015979
FSTT01000338
[FSTT] metagenome; soil
874
956
+
Leu
TAG
[ENA]
¢þ
>WENV180015977
FSTT01000331
[FSTT] metagenome; soil
1306
1377
+
Gln
TTG
[ENA]
¢þ
>WENV180015972
FSTT01000084
[FSTT] metagenome; soil
1507
1432
-
Glu
TTC
[ENA]
¢þ
>WENV180015988
FSTT01000506
[FSTT] metagenome; soil
1529
1604
+
Val
TAC
[ENA]
¢þ
>WENV180015989
FSTT01000506
[FSTT] metagenome; soil
1631
1707
+
Asp
GTC
[ENA]
¢þ
>WENV180015984
FSTT01000477
[FSTT] metagenome; soil
1794
1871
+
Pro
TGG
[ENA]
¢þ
>WENV180015971
FSTT01000069
[FSTT] metagenome; soil
2044
2130
+
Leu
GAG
[ENA]
¢þ
>WENV180015983
FSTT01000441
[FSTT] metagenome; soil
3022
2935
-
Leu
CAG
[ENA]
¢þ
>WENV180015982
FSTT01000436
[FSTT] metagenome; soil
3804
3893
+
Ser
CGA
[ENA]
¢þ
>WENV180015976
FSTT01000302
[FSTT] metagenome; soil
6709
6635
-
Val
CAC
[ENA]
¢þ
>WENV180015987
FSTT01000505
[FSTT] metagenome; soil
6891
6815
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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