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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSTU] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016001
FSTU01000468
[FSTU] metagenome; soil
99
175
+
Met
CAT
[ENA]
¢þ
>WENV180015996
FSTU01000335
[FSTU] metagenome; soil
159
234
+
Ala
CGC
[ENA]
¢þ
>WENV180015999
FSTU01000425
[FSTU] metagenome; soil
600
676
+
Ile
GAT
[ENA]
¢þ
>WENV180016000
FSTU01000425
[FSTU] metagenome; soil
846
921
+
Ala
TGC
[ENA]
¢þ
>WENV180015998
FSTU01000409
[FSTU] metagenome; soil
1200
1126
-
Ile2
CAT
[ENA]
¢þ
>WENV180015991
FSTU01000065
[FSTU] metagenome; soil
1320
1246
-
Leu
TAA
[ENA]
¢þ
>WENV180015990
FSTU01000001
[FSTU] metagenome; soil
1708
1782
+
Leu
TAG
[ENA]
¢þ
>WENV180015992
FSTU01000089
[FSTU] metagenome; soil
2040
1950
-
Ser
TGA
[ENA]
¢þ
>WENV180015994
FSTU01000170
[FSTU] metagenome; soil
3414
3503
+
Ser
CGA
[ENA]
¢þ
>WENV180015997
FSTU01000409
[FSTU] metagenome; soil
4389
4314
-
Asn
GTT
[ENA]
¢þ
>WENV180015993
FSTU01000168
[FSTU] metagenome; soil
9628
9555
-
Ala
GGC
[ENA]
¢þ
>WENV180015995
FSTU01000230
[FSTU] metagenome; soil
11378
11303
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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