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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSTV] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016008
FSTV01000754
[FSTV] metagenome; soil
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV180016002
FSTV01000183
[FSTV] metagenome; soil
142
68
-
Arg
ACG
[ENA]
¢þ
>WENV180016003
FSTV01000436
[FSTV] metagenome; soil
1516
1443
-
Asn
GTT
[ENA]
¢þ
>WENV180016006
FSTV01000502
[FSTV] metagenome; soil
1927
2014
+
Ser
GCT
[ENA]
¢þ
>WENV180016009
FSTV01000766
[FSTV] metagenome; soil
2665
2738
+
Cys
GCA
[ENA]
¢þ
>WENV180016007
FSTV01000525
[FSTV] metagenome; soil
2991
3065
+
Arg
TCG
[ENA]
¢þ
>WENV180016004
FSTV01000452
[FSTV] metagenome; soil
3371
3458
+
Ser
TGA
[ENA]
¢þ
>WENV180016005
FSTV01000499
[FSTV] metagenome; soil
3573
3499
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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