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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTW] metagenome; soil
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016010
FSTW01000032
[FSTW] metagenome; soil
112
184
+
Lys
TTT
[ENA]
¢þ
>WENV180016022
FSTW01000522
[FSTW] metagenome; soil
140
66
-
Asn
GTT
[ENA]
¢þ
>WENV180016023
FSTW01000530
[FSTW] metagenome; soil
257
184
-
Glu
TTC
[ENA]
¢þ
>WENV180016019
FSTW01000392
[FSTW] metagenome; soil
336
261
-
Phe
GAA
[ENA]
¢þ
>WENV180016027
FSTW01000738
[FSTW] metagenome; soil
487
560
+
Gln
TTG
[ENA]
¢þ
>WENV180016017
FSTW01000357
[FSTW] metagenome; soil
1064
1137
+
Gln
CTG
[ENA]
¢þ
>WENV180016014
FSTW01000243
[FSTW] metagenome; soil
1175
1248
+
Ile2
CAT
[ENA]
¢þ
>WENV180016012
FSTW01000138
[FSTW] metagenome; soil
1368
1284
-
Leu
CAA
[ENA]
¢þ
>WENV180016011
FSTW01000036
[FSTW] metagenome; soil
1386
1314
-
Met
CAT
[ENA]
¢þ
>WENV180016025
FSTW01000623
[FSTW] metagenome; soil
1968
1887
-
Leu
GAG
[ENA]
¢þ
>WENV180016024
FSTW01000567
[FSTW] metagenome; soil
2099
2184
+
Tyr
GTA
[ENA]
¢þ
>WENV180016015
FSTW01000251
[FSTW] metagenome; soil
2311
2236
-
Lys
CTT
[ENA]
¢þ
>WENV180016016
FSTW01000286
[FSTW] metagenome; soil
2355
2428
+
Gly
GCC
[ENA]
¢þ
>WENV180016018
FSTW01000375
[FSTW] metagenome; soil
2567
2483
-
Leu
CAG
[ENA]
¢þ
>WENV180016013
FSTW01000227
[FSTW] metagenome; soil
2989
2918
-
Gly
TCC
[ENA]
¢þ
>WENV180016020
FSTW01000433
[FSTW] metagenome; soil
3106
3179
+
Arg
ACG
[ENA]
¢þ
>WENV180016021
FSTW01000433
[FSTW] metagenome; soil
3287
3361
+
Arg
TCG
[ENA]
¢þ
>WENV180016026
FSTW01000724
[FSTW] metagenome; soil
4681
4609
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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