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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSTY] metagenome; soil
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016064
FSTY01000592
[FSTY] metagenome; soil
8
82
+
Ala
GGC
[ENA]
¢þ
>WENV180016062
FSTY01000529
[FSTY] metagenome; soil
10
99
+
Ser
GCT
[ENA]
¢þ
>WENV180016044
FSTY01000310
[FSTY] metagenome; soil
25
96
+
Cys
GCA
[ENA]
¢þ
>WENV180016051
FSTY01000395
[FSTY] metagenome; soil
25
99
+
fMet
CAT
[ENA]
¢þ
>WENV180016045
FSTY01000310
[FSTY] metagenome; soil
124
196
+
Val
GAC
[ENA]
¢þ
>WENV180016036
FSTY01000125
[FSTY] metagenome; soil
452
524
+
Arg
CCG
[ENA]
¢þ
>WENV180016067
FSTY01000656
[FSTY] metagenome; soil
527
609
+
Leu
TAG
[ENA]
¢þ
>WENV180016048
FSTY01000358
[FSTY] metagenome; soil
575
647
+
Gly
TCC
[ENA]
¢þ
>WENV180016028
FSTY01000007
[FSTY] metagenome; soil
603
678
+
Ala
CGC
[ENA]
¢þ
>WENV180016049
FSTY01000369
[FSTY] metagenome; soil
676
592
-
Leu
CAG
[ENA]
¢þ
>WENV180016029
FSTY01000043
[FSTY] metagenome; soil
759
833
+
Ile
GAT
[ENA]
¢þ
>WENV180016030
FSTY01000043
[FSTY] metagenome; soil
851
924
+
Ala
TGC
[ENA]
¢þ
>WENV180016043
FSTY01000305
[FSTY] metagenome; soil
976
904
-
Gln
TTG
[ENA]
¢þ
>WENV180016035
FSTY01000118
[FSTY] metagenome; soil
1069
1145
+
Ile2
CAT
[ENA]
¢þ
>WENV180016059
FSTY01000489
[FSTY] metagenome; soil
1156
1082
-
Pro
GGG
[ENA]
¢þ
>WENV180016056
FSTY01000445
[FSTY] metagenome; soil
1969
2056
+
Ser
GGA
[ENA]
¢þ
>WENV180016033
FSTY01000057
[FSTY] metagenome; soil
2022
1949
-
Ala
TGC
[ENA]
¢þ
>WENV180016032
FSTY01000057
[FSTY] metagenome; soil
2112
2037
-
Ile
GAT
[ENA]
¢þ
>WENV180016066
FSTY01000650
[FSTY] metagenome; soil
2339
2266
-
Val
CAC
[ENA]
¢þ
>WENV180016065
FSTY01000621
[FSTY] metagenome; soil
2480
2406
-
Gln
TTG
[ENA]
¢þ
>WENV180016050
FSTY01000381
[FSTY] metagenome; soil
2482
2409
-
Thr
CGT
[ENA]
¢þ
>WENV180016070
FSTY01000686
[FSTY] metagenome; soil
2639
2564
-
Glu
CTC
[ENA]
¢þ
>WENV180016031
FSTY01000044
[FSTY] metagenome; soil
2686
2760
+
Pro
TGG
[ENA]
¢þ
>WENV180016037
FSTY01000216
[FSTY] metagenome; soil
2810
2726
-
Leu
CAG
[ENA]
¢þ
>WENV180016061
FSTY01000519
[FSTY] metagenome; soil
2846
2775
-
Gly
CCC
[ENA]
¢þ
>WENV180016068
FSTY01000668
[FSTY] metagenome; soil
2995
2921
-
Leu
TAA
[ENA]
¢þ
>WENV180016041
FSTY01000290
[FSTY] metagenome; soil
3214
3139
-
Lys
CTT
[ENA]
¢þ
>WENV180016040
FSTY01000253
[FSTY] metagenome; soil
3242
3160
-
Leu
TAG
[ENA]
¢þ
>WENV180016057
FSTY01000451
[FSTY] metagenome; soil
3308
3383
+
Lys
TTT
[ENA]
¢þ
>WENV180016058
FSTY01000460
[FSTY] metagenome; soil
3309
3235
-
Thr
CGT
[ENA]
¢þ
>WENV180016063
FSTY01000540
[FSTY] metagenome; soil
3576
3493
-
Leu
CAA
[ENA]
¢þ
>WENV180016053
FSTY01000414
[FSTY] metagenome; soil
3872
3788
-
Tyr
GTA
[ENA]
¢þ
>WENV180016047
FSTY01000327
[FSTY] metagenome; soil
3917
3991
+
Pro
TGG
[ENA]
¢þ
>WENV180016060
FSTY01000504
[FSTY] metagenome; soil
4355
4280
-
Leu
TAA
[ENA]
¢þ
>WENV180016054
FSTY01000416
[FSTY] metagenome; soil
4438
4510
+
Gln
CTG
[ENA]
¢þ
>WENV180016071
FSTY01000690
[FSTY] metagenome; soil
4585
4501
-
Tyr
GTA
[ENA]
¢þ
>WENV180016038
FSTY01000230
[FSTY] metagenome; soil
5402
5328
-
fMet
CAT
[ENA]
¢þ
>WENV180016042
FSTY01000291
[FSTY] metagenome; soil
5733
5658
-
Lys
CTT
[ENA]
¢þ
>WENV180016046
FSTY01000314
[FSTY] metagenome; soil
6519
6446
-
Arg
CCG
[ENA]
¢þ
>WENV180016052
FSTY01000410
[FSTY] metagenome; soil
6788
6715
-
Val
TAC
[ENA]
¢þ
>WENV180016034
FSTY01000111
[FSTY] metagenome; soil
7073
6999
-
Arg
TCT
[ENA]
¢þ
>WENV180016039
FSTY01000235
[FSTY] metagenome; soil
7889
7815
-
Pro
GGG
[ENA]
¢þ
>WENV180016069
FSTY01000686
[FSTY] metagenome; soil
9525
9453
-
Gln
CTG
[ENA]
¢þ
>WENV180016072
FSTY01000698
[FSTY] metagenome; soil
10243
10315
+
Arg
CCG
[ENA]
¢þ
>WENV180016055
FSTY01000416
[FSTY] metagenome; soil
10726
10799
+
Glu
CTC
[ENA]
¢þ
>WENV180016073
FSTY01000704
[FSTY] metagenome; soil
13485
13412
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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