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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSTZ] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016081
FSTZ01000266
[FSTZ] metagenome; soil
40
115
+
Glu
TTC
[ENA]
¢þ
>WENV180016074
FSTZ01000023
[FSTZ] metagenome; soil
506
431
-
Arg
CCT
[ENA]
¢þ
>WENV180016082
FSTZ01000294
[FSTZ] metagenome; soil
1247
1321
+
Pro
CGG
[ENA]
¢þ
>WENV180016083
FSTZ01000369
[FSTZ] metagenome; soil
1337
1251
-
Ser
TGA
[ENA]
¢þ
>WENV180016086
FSTZ01000687
[FSTZ] metagenome; soil
1343
1270
-
Gly
CCC
[ENA]
¢þ
>WENV180016084
FSTZ01000562
[FSTZ] metagenome; soil
1496
1422
-
Lys
TTT
[ENA]
¢þ
>WENV180016075
FSTZ01000043
[FSTZ] metagenome; soil
2117
2191
+
Ala
GGC
[ENA]
¢þ
>WENV180016076
FSTZ01000053
[FSTZ] metagenome; soil
2533
2443
-
Ser
GCT
[ENA]
¢þ
>WENV180016080
FSTZ01000153
[FSTZ] metagenome; soil
3436
3350
-
Leu
CAG
[ENA]
¢þ
>WENV180016079
FSTZ01000153
[FSTZ] metagenome; soil
3600
3513
-
Leu
GAG
[ENA]
¢þ
>WENV180016078
FSTZ01000133
[FSTZ] metagenome; soil
3647
3723
+
Met
CAT
[ENA]
¢þ
>WENV180016085
FSTZ01000671
[FSTZ] metagenome; soil
3824
3752
-
Val
CAC
[ENA]
¢þ
>WENV180016087
FSTZ01000808
[FSTZ] metagenome; soil
4924
4998
+
Val
TAC
[ENA]
¢þ
>WENV180016077
FSTZ01000094
[FSTZ] metagenome; soil
4998
5072
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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