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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSUB] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016092
FSUB01000067
[FSUB] metagenome; soil
361
287
-
Arg
TCT
[ENA]
¢þ
>WENV180016089
FSUB01000057
[FSUB] metagenome; soil
1350
1275
-
Asn
GTT
[ENA]
¢þ
>WENV180016093
FSUB01000068
[FSUB] metagenome; soil
1781
1865
+
Leu
CAG
[ENA]
¢þ
>WENV180016091
FSUB01000061
[FSUB] metagenome; soil
1806
1730
-
Pro
CGG
[ENA]
¢þ
>WENV180016094
FSUB01000115
[FSUB] metagenome; soil
1932
1858
-
Thr
CGT
[ENA]
¢þ
>WENV180016090
FSUB01000061
[FSUB] metagenome; soil
2780
2855
+
Pro
TGG
[ENA]
¢þ
>WENV180016095
FSUB01000182
[FSUB] metagenome; soil
4454
4361
-
Ser
GGA
[ENA]
¢þ
>WENV180016097
FSUB01000274
[FSUB] metagenome; soil
4660
4585
-
Gln
CTG
[ENA]
¢þ
>WENV180016096
FSUB01000266
[FSUB] metagenome; soil
5228
5153
-
Ala
CGC
[ENA]
¢þ
>WENV180016098
FSUB01000297
[FSUB] metagenome; soil
9673
9749
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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