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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSUC] metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016108
FSUC01000322
[FSUC] metagenome; soil
420
348
-
Cys
GCA
[ENA]
¢þ
>WENV180016111
FSUC01000790
[FSUC] metagenome; soil
580
654
+
Arg
CCT
[ENA]
¢þ
>WENV180016110
FSUC01000475
[FSUC] metagenome; soil
633
706
+
Ala
CGC
[ENA]
¢þ
>WENV180016106
FSUC01000287
[FSUC] metagenome; soil
863
936
+
Asn
GTT
[ENA]
¢þ
>WENV180016112
FSUC01000875
[FSUC] metagenome; soil
1269
1345
+
Pro
CGG
[ENA]
¢þ
>WENV180016109
FSUC01000467
[FSUC] metagenome; soil
1299
1374
+
Thr
CGT
[ENA]
¢þ
>WENV180016107
FSUC01000321
[FSUC] metagenome; soil
2521
2448
-
Ala
GGC
[ENA]
¢þ
>WENV180016100
FSUC01000170
[FSUC] metagenome; soil
3359
3287
-
Glu
CTC
[ENA]
¢þ
>WENV180016099
FSUC01000170
[FSUC] metagenome; soil
3489
3418
-
Gln
CTG
[ENA]
¢þ
>WENV180016113
FSUC01000894
[FSUC] metagenome; soil
3598
3525
-
Gln
TTG
[ENA]
¢þ
>WENV180016101
FSUC01000282
[FSUC] metagenome; soil
4830
4917
+
Ser
TGA
[ENA]
¢þ
>WENV180016102
FSUC01000282
[FSUC] metagenome; soil
4960
5049
+
Ser
GCT
[ENA]
¢þ
>WENV180016103
FSUC01000282
[FSUC] metagenome; soil
5080
5156
+
Arg
ACG
[ENA]
¢þ
>WENV180016104
FSUC01000282
[FSUC] metagenome; soil
5652
5739
+
Ser
CGA
[ENA]
¢þ
>WENV180016105
FSUC01000282
[FSUC] metagenome; soil
5750
5838
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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