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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSUD] metagenome; soil
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016137
FSUD01000395
[FSUD] metagenome; soil
9
94
+
Tyr
GTA
[ENA]
¢þ
>WENV180016150
FSUD01000809
[FSUD] metagenome; soil
24
98
+
Val
GAC
[ENA]
¢þ
>WENV180016147
FSUD01000654
[FSUD] metagenome; soil
123
49
-
Asn
GTT
[ENA]
¢þ
>WENV180016124
FSUD01000155
[FSUD] metagenome; soil
124
198
+
Val
TAC
[ENA]
¢þ
>WENV180016134
FSUD01000371
[FSUD] metagenome; soil
182
257
+
Lys
CTT
[ENA]
¢þ
>WENV180016142
FSUD01000570
[FSUD] metagenome; soil
285
369
+
Leu
CAA
[ENA]
¢þ
>WENV180016115
FSUD01000059
[FSUD] metagenome; soil
562
647
+
Tyr
GTA
[ENA]
¢þ
>WENV180016136
FSUD01000374
[FSUD] metagenome; soil
658
744
+
Leu
GAG
[ENA]
¢þ
>WENV180016126
FSUD01000181
[FSUD] metagenome; soil
722
648
-
Thr
GGT
[ENA]
¢þ
>WENV180016140
FSUD01000504
[FSUD] metagenome; soil
1121
1197
+
Pro
CGG
[ENA]
¢þ
>WENV180016135
FSUD01000372
[FSUD] metagenome; soil
1277
1191
-
Leu
GAG
[ENA]
¢þ
>WENV180016119
FSUD01000116
[FSUD] metagenome; soil
1285
1211
-
Asn
GTT
[ENA]
¢þ
>WENV180016152
FSUD01000870
[FSUD] metagenome; soil
1361
1447
+
Leu
TAA
[ENA]
¢þ
>WENV180016139
FSUD01000490
[FSUD] metagenome; soil
1625
1551
-
Val
GAC
[ENA]
¢þ
>WENV180016145
FSUD01000645
[FSUD] metagenome; soil
1668
1743
+
Glu
TTC
[ENA]
¢þ
>WENV180016114
FSUD01000042
[FSUD] metagenome; soil
1849
1774
-
Lys
TTT
[ENA]
¢þ
>WENV180016133
FSUD01000342
[FSUD] metagenome; soil
2232
2156
-
Asp
GTC
[ENA]
¢þ
>WENV180016143
FSUD01000591
[FSUD] metagenome; soil
2293
2219
-
Val
CAC
[ENA]
¢þ
>WENV180016121
FSUD01000134
[FSUD] metagenome; soil
2331
2255
-
Met
CAT
[ENA]
¢þ
>WENV180016141
FSUD01000534
[FSUD] metagenome; soil
2363
2438
+
Thr
TGT
[ENA]
¢þ
>WENV180016130
FSUD01000255
[FSUD] metagenome; soil
2466
2555
+
Ser
TGA
[ENA]
¢þ
>WENV180016132
FSUD01000312
[FSUD] metagenome; soil
2541
2614
+
Cys
GCA
[ENA]
¢þ
>WENV180016138
FSUD01000482
[FSUD] metagenome; soil
2945
3031
+
Leu
CAG
[ENA]
¢þ
>WENV180016129
FSUD01000238
[FSUD] metagenome; soil
3540
3615
+
Thr
TGT
[ENA]
¢þ
>WENV180016122
FSUD01000146
[FSUD] metagenome; soil
3619
3694
+
Ala
CGC
[ENA]
¢þ
>WENV180016153
FSUD01000881
[FSUD] metagenome; soil
3740
3665
-
Thr
CGT
[ENA]
¢þ
>WENV180016131
FSUD01000280
[FSUD] metagenome; soil
4593
4518
-
Glu
CTC
[ENA]
¢þ
>WENV180016127
FSUD01000187
[FSUD] metagenome; soil
4612
4539
-
Cys
GCA
[ENA]
¢þ
>WENV180016120
FSUD01000130
[FSUD] metagenome; soil
4770
4859
+
Ser
GCT
[ENA]
¢þ
>WENV180016125
FSUD01000164
[FSUD] metagenome; soil
5340
5267
-
Gly
CCC
[ENA]
¢þ
>WENV180016148
FSUD01000676
[FSUD] metagenome; soil
5365
5281
-
Leu
TAG
[ENA]
¢þ
>WENV180016146
FSUD01000646
[FSUD] metagenome; soil
6332
6408
+
His
GTG
[ENA]
¢þ
>WENV180016117
FSUD01000099
[FSUD] metagenome; soil
6736
6650
-
Leu
TAA
[ENA]
¢þ
>WENV180016128
FSUD01000220
[FSUD] metagenome; soil
6793
6717
-
Pro
GGG
[ENA]
¢þ
>WENV180016149
FSUD01000712
[FSUD] metagenome; soil
7041
7131
+
Ser
GGA
[ENA]
¢þ
>WENV180016151
FSUD01000862
[FSUD] metagenome; soil
8268
8342
+
Gln
TTG
[ENA]
¢þ
>WENV180016123
FSUD01000151
[FSUD] metagenome; soil
8276
8203
-
Gln
CTG
[ENA]
¢þ
>WENV180016144
FSUD01000643
[FSUD] metagenome; soil
11254
11340
+
Leu
GAG
[ENA]
¢þ
>WENV180016118
FSUD01000103
[FSUD] metagenome; soil
12628
12703
+
Lys
TTT
[ENA]
¢þ
>WENV180016116
FSUD01000091
[FSUD] metagenome; soil
14148
14237
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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