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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSUE] metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016180
FSUE01000988
[FSUE] metagenome; soil
4
92
+
Ser
TGA
[ENA]
¢þ
>WENV180016158
FSUE01000180
[FSUE] metagenome; soil
15
100
+
Leu
CAG
[ENA]
¢þ
>WENV180016164
FSUE01000419
[FSUE] metagenome; soil
21
96
+
Gly
CCC
[ENA]
¢þ
>WENV180016165
FSUE01000561
[FSUE] metagenome; soil
23
97
+
Thr
CGT
[ENA]
¢þ
>WENV180016167
FSUE01000668
[FSUE] metagenome; soil
26
99
+
Asn
GTT
[ENA]
¢þ
>WENV180016155
FSUE01000047
[FSUE] metagenome; soil
34
108
+
Arg
CCT
[ENA]
¢þ
>WENV180016181
FSUE01001023
[FSUE] metagenome; soil
89
1
-
Ser
TGA
[ENA]
¢þ
>WENV180016162
FSUE01000373
[FSUE] metagenome; soil
180
109
-
Gln
CTG
[ENA]
¢þ
>WENV180016168
FSUE01000691
[FSUE] metagenome; soil
361
288
-
Cys
GCA
[ENA]
¢þ
>WENV180016154
FSUE01000037
[FSUE] metagenome; soil
994
919
-
Arg
TCG
[ENA]
¢þ
>WENV180016163
FSUE01000381
[FSUE] metagenome; soil
1141
1065
-
Arg
CCT
[ENA]
¢þ
>WENV180016174
FSUE01000798
[FSUE] metagenome; soil
1189
1262
+
Phe
GAA
[ENA]
¢þ
>WENV180016178
FSUE01000908
[FSUE] metagenome; soil
1739
1815
+
Arg
TCG
[ENA]
¢þ
>WENV180016177
FSUE01000895
[FSUE] metagenome; soil
2395
2322
-
Thr
CGT
[ENA]
¢þ
>WENV180016173
FSUE01000767
[FSUE] metagenome; soil
2581
2653
+
Val
TAC
[ENA]
¢þ
>WENV180016176
FSUE01000861
[FSUE] metagenome; soil
2639
2568
-
Gln
TTG
[ENA]
¢þ
>WENV180016169
FSUE01000729
[FSUE] metagenome; soil
2685
2760
+
Pro
CGG
[ENA]
¢þ
>WENV180016161
FSUE01000369
[FSUE] metagenome; soil
2927
2852
-
Pro
TGG
[ENA]
¢þ
>WENV180016183
FSUE01001118
[FSUE] metagenome; soil
2981
3068
+
Ser
GCT
[ENA]
¢þ
>WENV180016179
FSUE01000934
[FSUE] metagenome; soil
3202
3277
+
Arg
TCT
[ENA]
¢þ
>WENV180016170
FSUE01000732
[FSUE] metagenome; soil
3918
3991
+
Lys
CTT
[ENA]
¢þ
>WENV180016171
FSUE01000732
[FSUE] metagenome; soil
4018
4092
+
Gln
CTG
[ENA]
¢þ
>WENV180016172
FSUE01000732
[FSUE] metagenome; soil
4259
4331
+
Asn
GTT
[ENA]
¢þ
>WENV180016182
FSUE01001034
[FSUE] metagenome; soil
4940
4865
-
Met
CAT
[ENA]
¢þ
>WENV180016157
FSUE01000105
[FSUE] metagenome; soil
5587
5671
+
Leu
GAG
[ENA]
¢þ
>WENV180016175
FSUE01000855
[FSUE] metagenome; soil
6095
6010
-
Leu
CAA
[ENA]
¢þ
>WENV180016166
FSUE01000658
[FSUE] metagenome; soil
6427
6510
+
Leu
TAA
[ENA]
¢þ
>WENV180016159
FSUE01000212
[FSUE] metagenome; soil
8793
8720
-
Lys
CTT
[ENA]
¢þ
>WENV180016156
FSUE01000099
[FSUE] metagenome; soil
12330
12257
-
Val
CAC
[ENA]
¢þ
>WENV180016160
FSUE01000322
[FSUE] metagenome; soil
13516
13439
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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