This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FSUF] metagenome; soil
HIT:
59 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016210
FSUF01000966
[FSUF] metagenome; soil
3
77
+
Leu
TAA
[ENA]
¢þ
>WENV180016197
FSUF01000317
[FSUF] metagenome; soil
7
92
+
Tyr
GTA
[ENA]
¢þ
>WENV180016184
FSUF01000001
[FSUF] metagenome; soil
22
96
+
Lys
TTT
[ENA]
¢þ
>WENV180016214
FSUF01001067
[FSUF] metagenome; soil
45
118
+
Arg
CCG
[ENA]
¢þ
>WENV180016208
FSUF01000905
[FSUF] metagenome; soil
74
2
-
Gly
GCC
[ENA]
¢þ
>WENV180016196
FSUF01000304
[FSUF] metagenome; soil
93
8
-
Leu
GAG
[ENA]
¢þ
>WENV180016187
FSUF01000099
[FSUF] metagenome; soil
109
22
-
Ser
GGA
[ENA]
¢þ
>WENV180016219
FSUF01001307
[FSUF] metagenome; soil
111
27
-
Leu
TAG
[ENA]
¢þ
>WENV180016207
FSUF01000905
[FSUF] metagenome; soil
233
308
+
Val
CAC
[ENA]
¢þ
>WENV180016224
FSUF01001484
[FSUF] metagenome; soil
314
238
-
Ile2
CAT
[ENA]
¢þ
>WENV180016192
FSUF01000183
[FSUF] metagenome; soil
315
400
+
Ser
TGA
[ENA]
¢þ
>WENV180016237
FSUF01001676
[FSUF] metagenome; soil
324
251
-
Asn
GTT
[ENA]
¢þ
>WENV180016223
FSUF01001473
[FSUF] metagenome; soil
377
450
+
Arg
CCG
[ENA]
¢þ
>WENV180016185
FSUF01000022
[FSUF] metagenome; soil
383
312
-
Gly
CCC
[ENA]
¢þ
>WENV180016241
FSUF01001879
[FSUF] metagenome; soil
623
705
+
Leu
TAG
[ENA]
¢þ
>WENV180016206
FSUF01000849
[FSUF] metagenome; soil
658
731
+
Val
TAC
[ENA]
¢þ
>WENV180016238
FSUF01001790
[FSUF] metagenome; soil
801
874
+
Ala
TGC
[ENA]
¢þ
>WENV180016212
FSUF01000986
[FSUF] metagenome; soil
1105
1021
-
Leu
GAG
[ENA]
¢þ
>WENV180016229
FSUF01001570
[FSUF] metagenome; soil
1158
1085
-
Thr
TGT
[ENA]
¢þ
>WENV180016239
FSUF01001826
[FSUF] metagenome; soil
1221
1294
+
Thr
TGT
[ENA]
¢þ
>WENV180016236
FSUF01001672
[FSUF] metagenome; soil
1287
1361
+
Pro
CGG
[ENA]
¢þ
>WENV180016213
FSUF01001063
[FSUF] metagenome; soil
1299
1374
+
His
GTG
[ENA]
¢þ
>WENV180016216
FSUF01001136
[FSUF] metagenome; soil
1437
1511
+
Thr
TGT
[ENA]
¢þ
>WENV180016200
FSUF01000416
[FSUF] metagenome; soil
1466
1542
+
Met
CAT
[ENA]
¢þ
>WENV180016235
FSUF01001663
[FSUF] metagenome; soil
1482
1555
+
Val
TAC
[ENA]
¢þ
>WENV180016230
FSUF01001577
[FSUF] metagenome; soil
1537
1611
+
fMet
CAT
[ENA]
¢þ
>WENV180016198
FSUF01000331
[FSUF] metagenome; soil
1606
1532
-
Gln
TTG
[ENA]
¢þ
>WENV180016186
FSUF01000096
[FSUF] metagenome; soil
1624
1698
+
Met
CAT
[ENA]
¢þ
>WENV180016204
FSUF01000713
[FSUF] metagenome; soil
1672
1746
+
Pro
GGG
[ENA]
¢þ
>WENV180016193
FSUF01000183
[FSUF] metagenome; soil
1803
1892
+
Ser
GCT
[ENA]
¢þ
>WENV180016231
FSUF01001582
[FSUF] metagenome; soil
1811
1887
+
Pro
CGG
[ENA]
¢þ
>WENV180016218
FSUF01001265
[FSUF] metagenome; soil
2031
2106
+
Ala
GGC
[ENA]
¢þ
>WENV180016188
FSUF01000126
[FSUF] metagenome; soil
2179
2105
-
Leu
TAA
[ENA]
¢þ
>WENV180016226
FSUF01001511
[FSUF] metagenome; soil
2287
2372
+
Ser
TGA
[ENA]
¢þ
>WENV180016209
FSUF01000947
[FSUF] metagenome; soil
2375
2448
+
Lys
CTT
[ENA]
¢þ
>WENV180016221
FSUF01001386
[FSUF] metagenome; soil
2556
2629
+
Arg
CCT
[ENA]
¢þ
>WENV180016233
FSUF01001600
[FSUF] metagenome; soil
2632
2723
+
Ser
GCT
[ENA]
¢þ
>WENV180016203
FSUF01000618
[FSUF] metagenome; soil
2662
2588
-
Ile2
CAT
[ENA]
¢þ
>WENV180016217
FSUF01001161
[FSUF] metagenome; soil
2756
2674
-
Leu
TAG
[ENA]
¢þ
>WENV180016190
FSUF01000129
[FSUF] metagenome; soil
2901
2974
+
Thr
CGT
[ENA]
¢þ
>WENV180016194
FSUF01000213
[FSUF] metagenome; soil
3126
3198
+
Gln
CTG
[ENA]
¢þ
>WENV180016232
FSUF01001591
[FSUF] metagenome; soil
3161
3086
-
Lys
CTT
[ENA]
¢þ
>WENV180016242
FSUF01001899
[FSUF] metagenome; soil
3186
3112
-
Leu
TAA
[ENA]
¢þ
>WENV180016228
FSUF01001537
[FSUF] metagenome; soil
3186
3112
-
Thr
CGT
[ENA]
¢þ
>WENV180016201
FSUF01000558
[FSUF] metagenome; soil
3216
3142
-
fMet
CAT
[ENA]
¢þ
>WENV180016227
FSUF01001511
[FSUF] metagenome; soil
3750
3839
+
Ser
GCT
[ENA]
¢þ
>WENV180016211
FSUF01000985
[FSUF] metagenome; soil
3787
3714
-
Arg
ACG
[ENA]
¢þ
>WENV180016220
FSUF01001345
[FSUF] metagenome; soil
3931
3857
-
Pro
GGG
[ENA]
¢þ
>WENV180016189
FSUF01000127
[FSUF] metagenome; soil
4578
4504
-
Thr
TGT
[ENA]
¢þ
>WENV180016215
FSUF01001113
[FSUF] metagenome; soil
4693
4619
-
Pro
CGG
[ENA]
¢þ
>WENV180016205
FSUF01000808
[FSUF] metagenome; soil
4999
4924
-
Glu
CTC
[ENA]
¢þ
>WENV180016240
FSUF01001867
[FSUF] metagenome; soil
5433
5350
-
Leu
CAA
[ENA]
¢þ
>WENV180016234
FSUF01001629
[FSUF] metagenome; soil
6238
6149
-
Ser
CGA
[ENA]
¢þ
>WENV180016195
FSUF01000257
[FSUF] metagenome; soil
6497
6410
-
Ser
GGA
[ENA]
¢þ
>WENV180016199
FSUF01000354
[FSUF] metagenome; soil
7167
7093
-
fMet
CAT
[ENA]
¢þ
>WENV180016191
FSUF01000181
[FSUF] metagenome; soil
8012
7939
-
Arg
CCG
[ENA]
¢þ
>WENV180016222
FSUF01001471
[FSUF] metagenome; soil
9487
9412
-
Ala
CGC
[ENA]
¢þ
>WENV180016225
FSUF01001487
[FSUF] metagenome; soil
11482
11408
-
Pro
CGG
[ENA]
¢þ
>WENV180016202
FSUF01000560
[FSUF] metagenome; soil
19103
19028
-
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK