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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSUJ] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016256
FSUJ01000001
[FSUJ] metagenome; soil
497
586
+
Ser
CGA
[ENA]
¢þ
>WENV180016259
FSUJ01000429
[FSUJ] metagenome; soil
1146
1074
-
Gly
GCC
[ENA]
¢þ
>WENV180016260
FSUJ01000435
[FSUJ] metagenome; soil
1955
2038
+
Ser
GCT
[ENA]
¢þ
>WENV180016261
FSUJ01000435
[FSUJ] metagenome; soil
2106
2177
+
Arg
GCG
[ENA]
¢þ
>WENV180016262
FSUJ01000435
[FSUJ] metagenome; soil
2195
2265
+
Ala
TGC
[ENA]
¢þ
>WENV180016257
FSUJ01000018
[FSUJ] metagenome; soil
2401
2473
+
Lys
TTT
[ENA]
¢þ
>WENV180016263
FSUJ01000463
[FSUJ] metagenome; soil
2914
2832
-
Leu
CAG
[ENA]
¢þ
>WENV180016258
FSUJ01000286
[FSUJ] metagenome; soil
5493
5416
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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