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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSUP] metagenome; soil
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016281
FSUP01000142
[FSUP] metagenome; soil
4
78
+
Gly
GCC
[ENA]
¢þ
>WENV180016295
FSUP01000496
[FSUP] metagenome; soil
159
83
-
Arg
CCT
[ENA]
¢þ
>WENV180016290
FSUP01000413
[FSUP] metagenome; soil
229
156
-
Gln
TTG
[ENA]
¢þ
>WENV180016289
FSUP01000413
[FSUP] metagenome; soil
433
509
+
Pro
CGG
[ENA]
¢þ
>WENV180016284
FSUP01000158
[FSUP] metagenome; soil
474
550
+
Asp
GTC
[ENA]
¢þ
>WENV180016276
FSUP01000001
[FSUP] metagenome; soil
901
817
-
Leu
TAG
[ENA]
¢þ
>WENV180016303
FSUP01000716
[FSUP] metagenome; soil
1271
1187
-
Leu
GAG
[ENA]
¢þ
>WENV180016293
FSUP01000451
[FSUP] metagenome; soil
1476
1560
+
Leu
TAG
[ENA]
¢þ
>WENV180016294
FSUP01000462
[FSUP] metagenome; soil
1582
1668
+
Leu
CAG
[ENA]
¢þ
>WENV180016282
FSUP01000147
[FSUP] metagenome; soil
1590
1665
+
Ala
CGC
[ENA]
¢þ
>WENV180016287
FSUP01000188
[FSUP] metagenome; soil
2615
2704
+
Ser
CGA
[ENA]
¢þ
>WENV180016280
FSUP01000109
[FSUP] metagenome; soil
2752
2827
+
Ile2
CAT
[ENA]
¢þ
>WENV180016296
FSUP01000502
[FSUP] metagenome; soil
2775
2850
+
Phe
GAA
[ENA]
¢þ
>WENV180016292
FSUP01000426
[FSUP] metagenome; soil
3034
3123
+
Ser
GGA
[ENA]
¢þ
>WENV180016299
FSUP01000614
[FSUP] metagenome; soil
3370
3443
+
Cys
GCA
[ENA]
¢þ
>WENV180016277
FSUP01000021
[FSUP] metagenome; soil
3385
3311
-
Val
GAC
[ENA]
¢þ
>WENV180016291
FSUP01000420
[FSUP] metagenome; soil
3658
3732
+
Gly
CCC
[ENA]
¢þ
>WENV180016286
FSUP01000177
[FSUP] metagenome; soil
3676
3768
+
Ser
GCT
[ENA]
¢þ
>WENV180016297
FSUP01000584
[FSUP] metagenome; soil
4235
4310
+
Thr
CGT
[ENA]
¢þ
>WENV180016278
FSUP01000032
[FSUP] metagenome; soil
4954
5029
+
Phe
GAA
[ENA]
¢þ
>WENV180016283
FSUP01000157
[FSUP] metagenome; soil
5014
5089
+
Lys
CTT
[ENA]
¢þ
>WENV180016285
FSUP01000162
[FSUP] metagenome; soil
5763
5688
-
Thr
TGT
[ENA]
¢þ
>WENV180016300
FSUP01000672
[FSUP] metagenome; soil
6915
6991
+
Met
CAT
[ENA]
¢þ
>WENV180016298
FSUP01000613
[FSUP] metagenome; soil
7581
7655
+
Thr
GGT
[ENA]
¢þ
>WENV180016279
FSUP01000065
[FSUP] metagenome; soil
7621
7545
-
Arg
CCT
[ENA]
¢þ
>WENV180016301
FSUP01000691
[FSUP] metagenome; soil
8504
8429
-
Ile2
CAT
[ENA]
¢þ
>WENV180016288
FSUP01000358
[FSUP] metagenome; soil
11156
11252
+
SeC
TCA
[ENA]
¢þ
>WENV180016302
FSUP01000701
[FSUP] metagenome; soil
12377
12302
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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