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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSUQ] metagenome; soil
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016318
FSUQ01000308
[FSUQ] metagenome; soil
78
4
-
Val
GAC
[ENA]
¢þ
>WENV180016308
FSUQ01000108
[FSUQ] metagenome; soil
81
8
-
Pro
TGG
[ENA]
¢þ
>WENV180016304
FSUQ01000004
[FSUQ] metagenome; soil
94
21
-
Phe
GAA
[ENA]
¢þ
>WENV180016316
FSUQ01000228
[FSUQ] metagenome; soil
287
212
-
Arg
CCT
[ENA]
¢þ
>WENV180016309
FSUQ01000116
[FSUQ] metagenome; soil
309
236
-
Lys
CTT
[ENA]
¢þ
>WENV180016311
FSUQ01000125
[FSUQ] metagenome; soil
310
381
+
Gln
TTG
[ENA]
¢þ
>WENV180016305
FSUQ01000018
[FSUQ] metagenome; soil
550
459
-
Ser
TGA
[ENA]
¢þ
>WENV180016312
FSUQ01000126
[FSUQ] metagenome; soil
1392
1468
+
Pro
GGG
[ENA]
¢þ
>WENV180016319
FSUQ01000329
[FSUQ] metagenome; soil
1601
1674
+
Ala
CGC
[ENA]
¢þ
>WENV180016310
FSUQ01000120
[FSUQ] metagenome; soil
2625
2700
+
Thr
TGT
[ENA]
¢þ
>WENV180016315
FSUQ01000222
[FSUQ] metagenome; soil
2877
2960
+
Tyr
GTA
[ENA]
¢þ
>WENV180016317
FSUQ01000287
[FSUQ] metagenome; soil
3117
3190
+
Asp
GTC
[ENA]
¢þ
>WENV180016314
FSUQ01000154
[FSUQ] metagenome; soil
5432
5514
+
Leu
GAG
[ENA]
¢þ
>WENV180016306
FSUQ01000034
[FSUQ] metagenome; soil
5495
5568
+
Cys
GCA
[ENA]
¢þ
>WENV180016313
FSUQ01000127
[FSUQ] metagenome; soil
8287
8358
+
Val
CAC
[ENA]
¢þ
>WENV180016321
FSUQ01000352
[FSUQ] metagenome; soil
8579
8506
-
Trp
CCA
[ENA]
¢þ
>WENV180016320
FSUQ01000352
[FSUQ] metagenome; soil
10034
9960
-
Thr
GGT
[ENA]
¢þ
>WENV180016307
FSUQ01000065
[FSUQ] metagenome; soil
18112
18185
+
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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