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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSUR] metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016344
FSUR01000314
[FSUR] metagenome; soil
79
3
-
Pro
CGG
[ENA]
¢þ
>WENV180016343
FSUR01000314
[FSUR] metagenome; soil
182
106
-
Pro
TGG
[ENA]
¢þ
>WENV180016334
FSUR01000196
[FSUR] metagenome; soil
353
429
+
Arg
TCT
[ENA]
¢þ
>WENV180016332
FSUR01000134
[FSUR] metagenome; soil
546
470
-
Met
CAT
[ENA]
¢þ
>WENV180016346
FSUR01000358
[FSUR] metagenome; soil
575
648
+
Gly
CCC
[ENA]
¢þ
>WENV180016324
FSUR01000041
[FSUR] metagenome; soil
625
550
-
Lys
CTT
[ENA]
¢þ
>WENV180016341
FSUR01000311
[FSUR] metagenome; soil
743
659
-
Leu
GAG
[ENA]
¢þ
>WENV180016327
FSUR01000054
[FSUR] metagenome; soil
769
694
-
Asn
GTT
[ENA]
¢þ
>WENV180016351
FSUR01000454
[FSUR] metagenome; soil
932
858
-
Val
CAC
[ENA]
¢þ
>WENV180016347
FSUR01000370
[FSUR] metagenome; soil
1017
1092
+
Val
TAC
[ENA]
¢þ
>WENV180016326
FSUR01000054
[FSUR] metagenome; soil
1189
1116
-
Cys
GCA
[ENA]
¢þ
>WENV180016340
FSUR01000298
[FSUR] metagenome; soil
1336
1409
+
Gln
TTG
[ENA]
¢þ
>WENV180016342
FSUR01000314
[FSUR] metagenome; soil
1829
1755
-
Glu
TTC
[ENA]
¢þ
>WENV180016322
FSUR01000012
[FSUR] metagenome; soil
1880
1955
+
Ala
CGC
[ENA]
¢þ
>WENV180016323
FSUR01000027
[FSUR] metagenome; soil
2006
1932
-
Val
GAC
[ENA]
¢þ
>WENV180016339
FSUR01000281
[FSUR] metagenome; soil
2226
2137
-
Ser
CGA
[ENA]
¢þ
>WENV180016329
FSUR01000094
[FSUR] metagenome; soil
2660
2571
-
Ser
TGA
[ENA]
¢þ
>WENV180016335
FSUR01000205
[FSUR] metagenome; soil
2661
2736
+
His
GTG
[ENA]
¢þ
>WENV180016330
FSUR01000096
[FSUR] metagenome; soil
2714
2790
+
Pro
GGG
[ENA]
¢þ
>WENV180016336
FSUR01000228
[FSUR] metagenome; soil
3442
3517
+
Thr
TGT
[ENA]
¢þ
>WENV180016328
FSUR01000068
[FSUR] metagenome; soil
4462
4546
+
Leu
TAG
[ENA]
¢þ
>WENV180016331
FSUR01000114
[FSUR] metagenome; soil
4755
4679
-
fMet
CAT
[ENA]
¢þ
>WENV180016348
FSUR01000370
[FSUR] metagenome; soil
5514
5438
-
Asp
GTC
[ENA]
¢þ
>WENV180016349
FSUR01000403
[FSUR] metagenome; soil
6638
6714
+
Lys
TTT
[ENA]
¢þ
>WENV180016325
FSUR01000050
[FSUR] metagenome; soil
9847
9922
+
Trp
CCA
[ENA]
¢þ
>WENV180016337
FSUR01000244
[FSUR] metagenome; soil
10249
10165
-
Leu
CAG
[ENA]
¢þ
>WENV180016333
FSUR01000195
[FSUR] metagenome; soil
15649
15573
-
Arg
ACG
[ENA]
¢þ
>WENV180016338
FSUR01000259
[FSUR] metagenome; soil
16164
16247
+
Leu
CAA
[ENA]
¢þ
>WENV180016350
FSUR01000431
[FSUR] metagenome; soil
18028
18117
+
Ser
GGA
[ENA]
¢þ
>WENV180016345
FSUR01000356
[FSUR] metagenome; soil
18913
18838
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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