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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSUS] metagenome; soil
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016358
FSUS01000115
[FSUS] metagenome; soil
23
98
+
Thr
TGT
[ENA]
¢þ
>WENV180016360
FSUS01000248
[FSUS] metagenome; soil
81
6
-
Asn
GTT
[ENA]
¢þ
>WENV180016354
FSUS01000023
[FSUS] metagenome; soil
118
194
+
Pro
GGG
[ENA]
¢þ
>WENV180016353
FSUS01000022
[FSUS] metagenome; soil
164
89
-
Gly
GCC
[ENA]
¢þ
>WENV180016361
FSUS01000294
[FSUS] metagenome; soil
572
646
+
Val
CAC
[ENA]
¢þ
>WENV180016356
FSUS01000085
[FSUS] metagenome; soil
1045
1129
+
Leu
CAA
[ENA]
¢þ
>WENV180016369
FSUS01000557
[FSUS] metagenome; soil
1473
1398
-
Ala
CGC
[ENA]
¢þ
>WENV180016372
FSUS01000829
[FSUS] metagenome; soil
1617
1544
-
Gly
CCC
[ENA]
¢þ
>WENV180016371
FSUS01000733
[FSUS] metagenome; soil
1642
1567
-
Gly
GCC
[ENA]
¢þ
>WENV180016357
FSUS01000109
[FSUS] metagenome; soil
2106
2016
-
Ser
GGA
[ENA]
¢þ
>WENV180016370
FSUS01000575
[FSUS] metagenome; soil
2356
2440
+
Leu
GAG
[ENA]
¢þ
>WENV180016367
FSUS01000415
[FSUS] metagenome; soil
2679
2604
-
Arg
CCG
[ENA]
¢þ
>WENV180016366
FSUS01000413
[FSUS] metagenome; soil
3182
3256
+
Val
CAC
[ENA]
¢þ
>WENV180016359
FSUS01000201
[FSUS] metagenome; soil
3483
3408
-
Phe
GAA
[ENA]
¢þ
>WENV180016365
FSUS01000384
[FSUS] metagenome; soil
3511
3436
-
Phe
GAA
[ENA]
¢þ
>WENV180016362
FSUS01000321
[FSUS] metagenome; soil
4987
4895
-
Ser
GCT
[ENA]
¢þ
>WENV180016364
FSUS01000348
[FSUS] metagenome; soil
5496
5420
-
Arg
TCT
[ENA]
¢þ
>WENV180016363
FSUS01000348
[FSUS] metagenome; soil
5649
5573
-
Pro
TGG
[ENA]
¢þ
>WENV180016368
FSUS01000497
[FSUS] metagenome; soil
7857
7781
-
Pro
GGG
[ENA]
¢þ
>WENV180016352
FSUS01000015
[FSUS] metagenome; soil
10378
10303
-
Lys
TTT
[ENA]
¢þ
>WENV180016355
FSUS01000037
[FSUS] metagenome; soil
10672
10597
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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