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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FSUT] metagenome; soil
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016376
FSUT01000184
[FSUT] metagenome; soil
7
83
+
Met
CAT
[ENA]
¢þ
>WENV180016393
FSUT01000787
[FSUT] metagenome; soil
9
82
+
Arg
CCG
[ENA]
¢þ
>WENV180016386
FSUT01000619
[FSUT] metagenome; soil
13
86
+
Thr
CGT
[ENA]
¢þ
>WENV180016384
FSUT01000579
[FSUT] metagenome; soil
19
92
+
Asn
GTT
[ENA]
¢þ
>WENV180016387
FSUT01000653
[FSUT] metagenome; soil
206
134
-
Gln
CTG
[ENA]
¢þ
>WENV180016391
FSUT01000776
[FSUT] metagenome; soil
308
382
+
Arg
ACG
[ENA]
¢þ
>WENV180016392
FSUT01000783
[FSUT] metagenome; soil
424
497
+
Ala
CGC
[ENA]
¢þ
>WENV180016385
FSUT01000586
[FSUT] metagenome; soil
1584
1657
+
Arg
TCT
[ENA]
¢þ
>WENV180016380
FSUT01000515
[FSUT] metagenome; soil
1625
1549
-
Pro
GGG
[ENA]
¢þ
>WENV180016375
FSUT01000156
[FSUT] metagenome; soil
1628
1710
+
Leu
CAA
[ENA]
¢þ
>WENV180016390
FSUT01000766
[FSUT] metagenome; soil
1952
2026
+
Leu
TAA
[ENA]
¢þ
>WENV180016381
FSUT01000516
[FSUT] metagenome; soil
2116
2041
-
Ala
GGC
[ENA]
¢þ
>WENV180016382
FSUT01000540
[FSUT] metagenome; soil
2351
2278
-
Arg
TCT
[ENA]
¢þ
>WENV180016373
FSUT01000130
[FSUT] metagenome; soil
2813
2885
+
Gln
CTG
[ENA]
¢þ
>WENV180016389
FSUT01000716
[FSUT] metagenome; soil
2859
2785
-
Met
CAT
[ENA]
¢þ
>WENV180016377
FSUT01000247
[FSUT] metagenome; soil
2966
3039
+
Arg
TCT
[ENA]
¢þ
>WENV180016378
FSUT01000280
[FSUT] metagenome; soil
3202
3131
-
Cys
GCA
[ENA]
¢þ
>WENV180016388
FSUT01000678
[FSUT] metagenome; soil
3350
3279
-
Cys
GCA
[ENA]
¢þ
>WENV180016379
FSUT01000391
[FSUT] metagenome; soil
3567
3655
+
Ser
TGA
[ENA]
¢þ
>WENV180016374
FSUT01000137
[FSUT] metagenome; soil
4127
4051
-
fMet
CAT
[ENA]
¢þ
>WENV180016383
FSUT01000543
[FSUT] metagenome; soil
7730
7824
+
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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