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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FSUX] metagenome; soil
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016419
FSUX01000796
[FSUX] metagenome; soil
8
91
+
Leu
CAA
[ENA]
¢þ
>WENV180016407
FSUX01000189
[FSUX] metagenome; soil
10
86
+
Pro
CGG
[ENA]
¢þ
>WENV180016448
FSUX01001809
[FSUX] metagenome; soil
13
88
+
Ala
GGC
[ENA]
¢þ
>WENV180016441
FSUX01001699
[FSUX] metagenome; soil
13
89
+
Arg
CCG
[ENA]
¢þ
>WENV180016409
FSUX01000338
[FSUX] metagenome; soil
15
91
+
Val
TAC
[ENA]
¢þ
>WENV180016446
FSUX01001751
[FSUX] metagenome; soil
17
91
+
Val
CAC
[ENA]
¢þ
>WENV180016413
FSUX01000604
[FSUX] metagenome; soil
24
99
+
Ala
CGC
[ENA]
¢þ
>WENV180016425
FSUX01001084
[FSUX] metagenome; soil
53
129
+
Met
CAT
[ENA]
¢þ
>WENV180016453
FSUX01002061
[FSUX] metagenome; soil
146
73
-
Ala
GGC
[ENA]
¢þ
>WENV180016435
FSUX01001562
[FSUX] metagenome; soil
207
123
-
Leu
TAG
[ENA]
¢þ
>WENV180016423
FSUX01001054
[FSUX] metagenome; soil
332
260
-
Asn
GTT
[ENA]
¢þ
>WENV180016426
FSUX01001086
[FSUX] metagenome; soil
353
429
+
Arg
CCG
[ENA]
¢þ
>WENV180016424
FSUX01001082
[FSUX] metagenome; soil
410
328
-
Leu
TAG
[ENA]
¢þ
>WENV180016445
FSUX01001738
[FSUX] metagenome; soil
551
626
+
Ala
GGC
[ENA]
¢þ
>WENV180016403
FSUX01000077
[FSUX] metagenome; soil
661
737
+
Asp
GTC
[ENA]
¢þ
>WENV180016443
FSUX01001703
[FSUX] metagenome; soil
674
749
+
Asn
GTT
[ENA]
¢þ
>WENV180016416
FSUX01000666
[FSUX] metagenome; soil
893
966
+
Cys
GCA
[ENA]
¢þ
>WENV180016417
FSUX01000721
[FSUX] metagenome; soil
1041
1116
+
Lys
CTT
[ENA]
¢þ
>WENV180016442
FSUX01001702
[FSUX] metagenome; soil
1185
1261
+
Pro
GGG
[ENA]
¢þ
>WENV180016437
FSUX01001620
[FSUX] metagenome; soil
1269
1343
+
Lys
TTT
[ENA]
¢þ
>WENV180016451
FSUX01001905
[FSUX] metagenome; soil
1345
1420
+
Thr
TGT
[ENA]
¢þ
>WENV180016433
FSUX01001425
[FSUX] metagenome; soil
1412
1487
+
Ile2
CAT
[ENA]
¢þ
>WENV180016405
FSUX01000097
[FSUX] metagenome; soil
1533
1444
-
Ser
GGA
[ENA]
¢þ
>WENV180016415
FSUX01000660
[FSUX] metagenome; soil
1581
1508
-
Gly
CCC
[ENA]
¢þ
>WENV180016411
FSUX01000444
[FSUX] metagenome; soil
1829
1919
+
Ser
GGA
[ENA]
¢þ
>WENV180016432
FSUX01001423
[FSUX] metagenome; soil
1980
1896
-
Leu
CAA
[ENA]
¢þ
>WENV180016449
FSUX01001852
[FSUX] metagenome; soil
2090
2015
-
Lys
CTT
[ENA]
¢þ
>WENV180016431
FSUX01001371
[FSUX] metagenome; soil
2491
2418
-
Gln
TTG
[ENA]
¢þ
>WENV180016401
FSUX01000023
[FSUX] metagenome; soil
2704
2615
-
Ser
CGA
[ENA]
¢þ
>WENV180016422
FSUX01000954
[FSUX] metagenome; soil
2713
2788
+
Thr
TGT
[ENA]
¢þ
>WENV180016418
FSUX01000766
[FSUX] metagenome; soil
2841
2765
-
Arg
CCG
[ENA]
¢þ
>WENV180016408
FSUX01000269
[FSUX] metagenome; soil
2910
2821
-
Ser
CGA
[ENA]
¢þ
>WENV180016427
FSUX01001089
[FSUX] metagenome; soil
2937
2853
-
Leu
TAA
[ENA]
¢þ
>WENV180016444
FSUX01001713
[FSUX] metagenome; soil
3010
2935
-
Thr
TGT
[ENA]
¢þ
>WENV180016402
FSUX01000066
[FSUX] metagenome; soil
3213
3287
+
Thr
CGT
[ENA]
¢þ
>WENV180016447
FSUX01001793
[FSUX] metagenome; soil
3435
3361
-
Thr
GGT
[ENA]
¢þ
>WENV180016421
FSUX01000861
[FSUX] metagenome; soil
3592
3520
-
Lys
TTT
[ENA]
¢þ
>WENV180016440
FSUX01001666
[FSUX] metagenome; soil
3647
3574
-
Gln
TTG
[ENA]
¢þ
>WENV180016420
FSUX01000800
[FSUX] metagenome; soil
3770
3686
-
Leu
TAA
[ENA]
¢þ
>WENV180016439
FSUX01001654
[FSUX] metagenome; soil
3789
3864
+
Thr
CGT
[ENA]
¢þ
>WENV180016406
FSUX01000147
[FSUX] metagenome; soil
3901
3977
+
Arg
CCT
[ENA]
¢þ
>WENV180016404
FSUX01000096
[FSUX] metagenome; soil
4720
4645
-
Lys
CTT
[ENA]
¢þ
>WENV180016430
FSUX01001282
[FSUX] metagenome; soil
4840
4914
+
Val
TAC
[ENA]
¢þ
>WENV180016428
FSUX01001174
[FSUX] metagenome; soil
5013
5089
+
Pro
GGG
[ENA]
¢þ
>WENV180016412
FSUX01000512
[FSUX] metagenome; soil
5415
5341
-
Val
GAC
[ENA]
¢þ
>WENV180016450
FSUX01001876
[FSUX] metagenome; soil
5570
5482
-
Leu
TAA
[ENA]
¢þ
>WENV180016452
FSUX01001923
[FSUX] metagenome; soil
5960
6034
+
His
GTG
[ENA]
¢þ
>WENV180016434
FSUX01001543
[FSUX] metagenome; soil
6848
6772
-
His
GTG
[ENA]
¢þ
>WENV180016436
FSUX01001563
[FSUX] metagenome; soil
6923
6848
-
Ile2
CAT
[ENA]
¢þ
>WENV180016438
FSUX01001634
[FSUX] metagenome; soil
6932
6858
-
Lys
TTT
[ENA]
¢þ
>WENV180016429
FSUX01001185
[FSUX] metagenome; soil
7898
7973
+
Phe
GAA
[ENA]
¢þ
>WENV180016414
FSUX01000613
[FSUX] metagenome; soil
8125
8200
+
Phe
GAA
[ENA]
¢þ
>WENV180016410
FSUX01000441
[FSUX] metagenome; soil
12125
12051
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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