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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSVF] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016467
FSVF01000082
[FSVF] metagenome; soil
89
14
-
Ala
CGC
[ENA]
¢þ
>WENV180016478
FSVF01000457
[FSVF] metagenome; soil
165
241
+
Asp
GTC
[ENA]
¢þ
>WENV180016471
FSVF01000246
[FSVF] metagenome; soil
716
627
-
Ser
GGA
[ENA]
¢þ
>WENV180016476
FSVF01000384
[FSVF] metagenome; soil
1423
1347
-
Pro
GGG
[ENA]
¢þ
>WENV180016477
FSVF01000405
[FSVF] metagenome; soil
1540
1615
+
Val
TAC
[ENA]
¢þ
>WENV180016464
FSVF01000044
[FSVF] metagenome; soil
1576
1651
+
Ile2
CAT
[ENA]
¢þ
>WENV180016468
FSVF01000100
[FSVF] metagenome; soil
2589
2516
-
Gln
TTG
[ENA]
¢þ
>WENV180016475
FSVF01000338
[FSVF] metagenome; soil
3128
3203
+
Phe
GAA
[ENA]
¢þ
>WENV180016474
FSVF01000336
[FSVF] metagenome; soil
3592
3517
-
His
GTG
[ENA]
¢þ
>WENV180016480
FSVF01000465
[FSVF] metagenome; soil
3712
3637
-
Asn
GTT
[ENA]
¢þ
>WENV180016479
FSVF01000465
[FSVF] metagenome; soil
4537
4464
-
Cys
GCA
[ENA]
¢þ
>WENV180016472
FSVF01000291
[FSVF] metagenome; soil
5410
5336
-
Thr
GGT
[ENA]
¢þ
>WENV180016470
FSVF01000151
[FSVF] metagenome; soil
5795
5720
-
Trp
CCA
[ENA]
¢þ
>WENV180016465
FSVF01000055
[FSVF] metagenome; soil
8040
7966
-
Val
CAC
[ENA]
¢þ
>WENV180016466
FSVF01000082
[FSVF] metagenome; soil
8253
8177
-
Met
CAT
[ENA]
¢þ
>WENV180016473
FSVF01000324
[FSVF] metagenome; soil
9764
9839
+
Thr
CGT
[ENA]
¢þ
>WENV180016469
FSVF01000127
[FSVF] metagenome; soil
18635
18561
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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