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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FSVG] metagenome; soil
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016518
FSVG01001576
[FSVG] metagenome; soil
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV180016521
FSVG01001634
[FSVG] metagenome; soil
3
78
+
Glu
TTC
[ENA]
¢þ
>WENV180016494
FSVG01000791
[FSVG] metagenome; soil
6
93
+
Ser
CGA
[ENA]
¢þ
>WENV180016533
FSVG01001980
[FSVG] metagenome; soil
6
96
+
Ser
GGA
[ENA]
¢þ
>WENV180016481
FSVG01000011
[FSVG] metagenome; soil
9
83
+
Asn
GTT
[ENA]
¢þ
>WENV180016531
FSVG01001877
[FSVG] metagenome; soil
12
88
+
Met
CAT
[ENA]
¢þ
>WENV180016520
FSVG01001630
[FSVG] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180016495
FSVG01000858
[FSVG] metagenome; soil
18
112
+
SeC
TCA
[ENA]
¢þ
>WENV180016484
FSVG01000267
[FSVG] metagenome; soil
19
95
+
Val
GAC
[ENA]
¢þ
>WENV180016525
FSVG01001758
[FSVG] metagenome; soil
21
96
+
His
GTG
[ENA]
¢þ
>WENV180016492
FSVG01000647
[FSVG] metagenome; soil
76
2
-
Val
GAC
[ENA]
¢þ
>WENV180016509
FSVG01001206
[FSVG] metagenome; soil
86
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180016487
FSVG01000468
[FSVG] metagenome; soil
115
190
+
Thr
TGT
[ENA]
¢þ
>WENV180016522
FSVG01001634
[FSVG] metagenome; soil
126
202
+
Asp
GTC
[ENA]
¢þ
>WENV180016491
FSVG01000622
[FSVG] metagenome; soil
148
55
-
Ser
GCT
[ENA]
¢þ
>WENV180016505
FSVG01001188
[FSVG] metagenome; soil
262
337
+
Glu
TTC
[ENA]
¢þ
>WENV180016493
FSVG01000785
[FSVG] metagenome; soil
287
363
+
Arg
TCT
[ENA]
¢þ
>WENV180016496
FSVG01000863
[FSVG] metagenome; soil
346
421
+
Val
TAC
[ENA]
¢þ
>WENV180016512
FSVG01001422
[FSVG] metagenome; soil
389
473
+
Leu
CAA
[ENA]
¢þ
>WENV180016523
FSVG01001702
[FSVG] metagenome; soil
413
489
+
Arg
TCT
[ENA]
¢þ
>WENV180016506
FSVG01001188
[FSVG] metagenome; soil
430
505
+
Asp
GTC
[ENA]
¢þ
>WENV180016507
FSVG01001188
[FSVG] metagenome; soil
511
596
+
Cys
GCA
[ENA]
¢þ
>WENV180016508
FSVG01001188
[FSVG] metagenome; soil
618
693
+
His
GTG
[ENA]
¢þ
>WENV180016485
FSVG01000281
[FSVG] metagenome; soil
997
1084
+
Ser
TGA
[ENA]
¢þ
>WENV180016500
FSVG01000909
[FSVG] metagenome; soil
1837
1764
-
Ala
TGC
[ENA]
¢þ
>WENV180016537
FSVG01002072
[FSVG] metagenome; soil
1969
1881
-
Leu
TAA
[ENA]
¢þ
>WENV180016499
FSVG01000909
[FSVG] metagenome; soil
2005
1931
-
Ile
GAT
[ENA]
¢þ
>WENV180016498
FSVG01000888
[FSVG] metagenome; soil
2011
1922
-
Ser
CGA
[ENA]
¢þ
>WENV180016504
FSVG01001183
[FSVG] metagenome; soil
2127
2051
-
Arg
CCT
[ENA]
¢þ
>WENV180016501
FSVG01001124
[FSVG] metagenome; soil
2258
2333
+
Asn
GTT
[ENA]
¢þ
>WENV180016513
FSVG01001437
[FSVG] metagenome; soil
2302
2375
+
Gly
CCC
[ENA]
¢þ
>WENV180016488
FSVG01000480
[FSVG] metagenome; soil
2451
2527
+
Arg
ACG
[ENA]
¢þ
>WENV180016483
FSVG01000111
[FSVG] metagenome; soil
2509
2419
-
Ser
GGA
[ENA]
¢þ
>WENV180016497
FSVG01000863
[FSVG] metagenome; soil
2584
2659
+
His
GTG
[ENA]
¢þ
>WENV180016517
FSVG01001536
[FSVG] metagenome; soil
2598
2522
-
Pro
TGG
[ENA]
¢þ
>WENV180016482
FSVG01000028
[FSVG] metagenome; soil
2639
2563
-
Pro
TGG
[ENA]
¢þ
>WENV180016536
FSVG01002054
[FSVG] metagenome; soil
2662
2738
+
Arg
CCG
[ENA]
¢þ
>WENV180016532
FSVG01001972
[FSVG] metagenome; soil
3113
3039
-
Val
CAC
[ENA]
¢þ
>WENV180016514
FSVG01001447
[FSVG] metagenome; soil
3233
3308
+
Lys
TTT
[ENA]
¢þ
>WENV180016515
FSVG01001457
[FSVG] metagenome; soil
3386
3310
-
Arg
TCT
[ENA]
¢þ
>WENV180016524
FSVG01001702
[FSVG] metagenome; soil
3467
3541
+
Pro
TGG
[ENA]
¢þ
>WENV180016526
FSVG01001780
[FSVG] metagenome; soil
3585
3510
-
Thr
TGT
[ENA]
¢þ
>WENV180016510
FSVG01001272
[FSVG] metagenome; soil
4356
4450
+
SeC
TCA
[ENA]
¢þ
>WENV180016516
FSVG01001485
[FSVG] metagenome; soil
4892
4978
+
Leu
TAG
[ENA]
¢þ
>WENV180016528
FSVG01001828
[FSVG] metagenome; soil
5013
4922
-
Leu
TAA
[ENA]
¢þ
>WENV180016530
FSVG01001842
[FSVG] metagenome; soil
5385
5312
-
Gly
TCC
[ENA]
¢þ
>WENV180016502
FSVG01001143
[FSVG] metagenome; soil
5422
5497
+
Ala
CGC
[ENA]
¢þ
>WENV180016511
FSVG01001327
[FSVG] metagenome; soil
5598
5525
-
Ala
CGC
[ENA]
¢þ
>WENV180016527
FSVG01001828
[FSVG] metagenome; soil
6537
6464
-
Cys
GCA
[ENA]
¢þ
>WENV180016529
FSVG01001831
[FSVG] metagenome; soil
6652
6563
-
Ser
GCT
[ENA]
¢þ
>WENV180016534
FSVG01001989
[FSVG] metagenome; soil
6820
6896
+
Asp
GTC
[ENA]
¢þ
>WENV180016519
FSVG01001611
[FSVG] metagenome; soil
7500
7408
-
Ser
GCT
[ENA]
¢þ
>WENV180016490
FSVG01000603
[FSVG] metagenome; soil
7784
7708
-
Trp
CCA
[ENA]
¢þ
>WENV180016486
FSVG01000428
[FSVG] metagenome; soil
9608
9534
-
Gly
GCC
[ENA]
¢þ
>WENV180016489
FSVG01000602
[FSVG] metagenome; soil
10407
10482
+
Phe
GAA
[ENA]
¢þ
>WENV180016535
FSVG01002007
[FSVG] metagenome; soil
15557
15481
-
fMet
CAT
[ENA]
¢þ
>WENV180016503
FSVG01001149
[FSVG] metagenome; soil
33488
33412
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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