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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FSVH] metagenome; soil
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016574
FSVH01000272
[FSVH] metagenome; soil
6
97
+
Ser
GCT
[ENA]
¢þ
>WENV180016566
FSVH01000235
[FSVH] metagenome; soil
8
94
+
Leu
CAG
[ENA]
¢þ
>WENV180016572
FSVH01000263
[FSVH] metagenome; soil
10
86
+
Asp
GTC
[ENA]
¢þ
>WENV180016570
FSVH01000258
[FSVH] metagenome; soil
14
89
+
Ala
CGC
[ENA]
¢þ
>WENV180016586
FSVH01000369
[FSVH] metagenome; soil
14
98
+
Leu
TAG
[ENA]
¢þ
>WENV180016556
FSVH01000159
[FSVH] metagenome; soil
19
94
+
Thr
TGT
[ENA]
¢þ
>WENV180016549
FSVH01000123
[FSVH] metagenome; soil
19
95
+
fMet
CAT
[ENA]
¢þ
>WENV180016561
FSVH01000222
[FSVH] metagenome; soil
21
94
+
Cys
GCA
[ENA]
¢þ
>WENV180016576
FSVH01000280
[FSVH] metagenome; soil
25
99
+
Gly
GCC
[ENA]
¢þ
>WENV180016543
FSVH01000076
[FSVH] metagenome; soil
78
2
-
Pro
GGG
[ENA]
¢þ
>WENV180016558
FSVH01000184
[FSVH] metagenome; soil
88
1
-
Ser
TGA
[ENA]
¢þ
>WENV180016547
FSVH01000118
[FSVH] metagenome; soil
94
3
-
Ser
GCT
[ENA]
¢þ
>WENV180016582
FSVH01000337
[FSVH] metagenome; soil
98
15
-
Tyr
GTA
[ENA]
¢þ
>WENV180016585
FSVH01000368
[FSVH] metagenome; soil
120
44
-
Lys
TTT
[ENA]
¢þ
>WENV180016560
FSVH01000198
[FSVH] metagenome; soil
286
197
-
Ser
GGA
[ENA]
¢þ
>WENV180016562
FSVH01000222
[FSVH] metagenome; soil
382
457
+
Asn
GTT
[ENA]
¢þ
>WENV180016584
FSVH01000345
[FSVH] metagenome; soil
638
564
-
Thr
GGT
[ENA]
¢þ
>WENV180016565
FSVH01000232
[FSVH] metagenome; soil
1703
1776
+
Gly
CCC
[ENA]
¢þ
>WENV180016542
FSVH01000054
[FSVH] metagenome; soil
2206
2279
+
Gly
CCC
[ENA]
¢þ
>WENV180016541
FSVH01000037
[FSVH] metagenome; soil
2728
2654
-
Val
CAC
[ENA]
¢þ
>WENV180016579
FSVH01000328
[FSVH] metagenome; soil
2813
2888
+
Ala
CGC
[ENA]
¢þ
>WENV180016577
FSVH01000292
[FSVH] metagenome; soil
4202
4278
+
Met
CAT
[ENA]
¢þ
>WENV180016550
FSVH01000131
[FSVH] metagenome; soil
4964
4888
-
Arg
CCT
[ENA]
¢þ
>WENV180016580
FSVH01000330
[FSVH] metagenome; soil
5123
5198
+
Val
TAC
[ENA]
¢þ
>WENV180016568
FSVH01000242
[FSVH] metagenome; soil
5212
5137
-
Trp
CCA
[ENA]
¢þ
>WENV180016581
FSVH01000337
[FSVH] metagenome; soil
5808
5883
+
Thr
TGT
[ENA]
¢þ
>WENV180016563
FSVH01000226
[FSVH] metagenome; soil
6506
6430
-
Pro
GGG
[ENA]
¢þ
>WENV180016583
FSVH01000345
[FSVH] metagenome; soil
6526
6601
+
Phe
GAA
[ENA]
¢þ
>WENV180016545
FSVH01000108
[FSVH] metagenome; soil
6742
6815
+
Gln
TTG
[ENA]
¢þ
>WENV180016557
FSVH01000184
[FSVH] metagenome; soil
7401
7326
-
Val
TAC
[ENA]
¢þ
>WENV180016540
FSVH01000022
[FSVH] metagenome; soil
7760
7684
-
Arg
TCT
[ENA]
¢þ
>WENV180016539
FSVH01000022
[FSVH] metagenome; soil
8416
8340
-
Pro
CGG
[ENA]
¢þ
>WENV180016573
FSVH01000269
[FSVH] metagenome; soil
8514
8590
+
Met
CAT
[ENA]
¢þ
>WENV180016538
FSVH01000022
[FSVH] metagenome; soil
8534
8458
-
Pro
TGG
[ENA]
¢þ
>WENV180016571
FSVH01000259
[FSVH] metagenome; soil
9038
9113
+
Trp
CCA
[ENA]
¢þ
>WENV180016578
FSVH01000301
[FSVH] metagenome; soil
10943
11018
+
Ile2
CAT
[ENA]
¢þ
>WENV180016544
FSVH01000078
[FSVH] metagenome; soil
14158
14069
-
Ser
TGA
[ENA]
¢þ
>WENV180016551
FSVH01000142
[FSVH] metagenome; soil
14352
14436
+
Leu
GAG
[ENA]
¢þ
>WENV180016567
FSVH01000237
[FSVH] metagenome; soil
16484
16558
+
Gly
GCC
[ENA]
¢þ
>WENV180016569
FSVH01000255
[FSVH] metagenome; soil
17518
17443
-
Thr
CGT
[ENA]
¢þ
>WENV180016575
FSVH01000273
[FSVH] metagenome; soil
24872
24946
+
Val
CAC
[ENA]
¢þ
>WENV180016546
FSVH01000111
[FSVH] metagenome; soil
26656
26580
-
His
GTG
[ENA]
¢þ
>WENV180016552
FSVH01000142
[FSVH] metagenome; soil
27201
27287
+
Leu
TAA
[ENA]
¢þ
>WENV180016564
FSVH01000231
[FSVH] metagenome; soil
32466
32392
-
Glu
TTC
[ENA]
¢þ
>WENV180016554
FSVH01000153
[FSVH] metagenome; soil
37642
37566
-
Arg
CCG
[ENA]
¢þ
>WENV180016559
FSVH01000194
[FSVH] metagenome; soil
38675
38748
+
Cys
GCA
[ENA]
¢þ
>WENV180016548
FSVH01000119
[FSVH] metagenome; soil
53645
53561
-
Leu
CAA
[ENA]
¢þ
>WENV180016553
FSVH01000146
[FSVH] metagenome; soil
83913
83837
-
Arg
ACG
[ENA]
¢þ
>WENV180016555
FSVH01000155
[FSVH] metagenome; soil
107493
107568
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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